Crystal structure of Plasmodium falciparum PdxK with ligands AMP-PNP and PL.
Gao, K., Wang, W., Groves, M.R.(2019) Crystals (Basel) 
- DOI: https://doi.org/10.3390/cryst9100534
Experimental Data Snapshot
Starting Model: experimental
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(2019) Crystals (Basel) 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Pyridoxal kinase | 497 | Plasmodium falciparum 3D7 | Mutation(s): 0  Gene Names: PF3D7_0616000 EC: 2.7.1.35 | ||
UniProt | |||||
Find proteins for C6KT01 (Plasmodium falciparum (isolate 3D7)) Explore C6KT01  Go to UniProtKB:  C6KT01 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C6KT01 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ANP Query on ANP | C [auth A], G [auth B] | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C10 H17 N6 O12 P3 PVKSNHVPLWYQGJ-KQYNXXCUSA-N | |||
PXL Query on PXL | D [auth A], H [auth B] | 3-HYDROXY-5-(HYDROXYMETHYL)-2-METHYLISONICOTINALDEHYDE C8 H9 N O3 RADKZDMFGJYCBB-UHFFFAOYSA-N | |||
MG Query on MG | E [auth A], F [auth A], I [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 52.703 | α = 90 |
b = 62.004 | β = 94.99 |
c = 93.712 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
Aimless | data scaling |
PHENIX | phasing |