6STW | pdb_00006stw

Adenovirus 15 Fiber Knob protein

PDB DOI: https://doi.org/10.2210/pdb6STW/pdb

Classification: VIRAL PROTEIN
Organism(s): Human adenovirus 15
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2019-09-11 Released: 2021-03-31
Deposition Author(s): Mundy, R.M., Baker, A.T., Rizkallah, P.J., Parker, A.L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.37 Å
R-Value Free:
0.199 (Depositor), 0.200 (DCC)
R-Value Work:
0.173 (Depositor), 0.180 (DCC)
R-Value Observed:
0.174 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Broad sialic acid usage amongst species D human adenovirus

Mundy, R.M., Baker, A.T., Bates, E.A., Cunliffe, T.G., Teijeira-Crespo, A., Moses, E., Rizkallah, P.J., Parker, A.L.

(2023) Npj Viruses 1: 1

DOI: https://doi.org/10.1038/s44298-023-00001-5

Macromolecule Content

Total Structure Weight: 64.33 kDa
Atom Count: 5,429
Modeled Residue Count: 569
Deposited Residue Count: 570
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fiber protein	A, B, C	190	Human adenovirus 15	Mutation(s): 0 Gene Names: L5
UniProt
Find proteins for P36847 (Human adenovirus D serotype 15) Explore P36847 Go to UniProtKB: P36847
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P36847
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.37 Å
R-Value Free: 0.199 (Depositor), 0.200 (DCC)
R-Value Work: 0.173 (Depositor), 0.180 (DCC)
R-Value Observed: 0.174 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.58	α = 90
b = 89.18	β = 90
c = 106.2	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
Aimless	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2021-03-31

Deposition Author(s):

Rizkallah, P.J.

Revision History (Full details and data files)

Version 1.0: 2021-03-31
Type: Initial release
Version 1.1: 2023-09-20
Changes: Data collection, Database references
Version 1.2: 2023-10-11
Changes: Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.