6SOV

Fragments KCL_615 and KCL_802 in complex with MAP kinase p38-alpha


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.31 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.221 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Targeting the p38 / TAB1 interface by single fragment in-crystal screening and structure-based drug design.

De Nicola, G.F.Nichols, C.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Mitogen-activated protein kinase 14
A
361Mus musculusMutation(s): 0 
Gene Names: Mapk14 (Crk1, Csbp1, Csbp2)
EC: 2.7.11.24
Find proteins for P47811 (Mus musculus)
Go to UniProtKB:  P47811
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SB4
Query on SB4

Download SDF File 
Download CCD File 
A
4-(4-FLUOROPHENYL)-1-(4-PIPERIDINYL)-5-(2-AMINO-4-PYRIMIDINYL)-IMIDAZOLE
SB220025
C18 H19 F N6
VSPFURGQAYMVAN-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
LOW
Query on LOW

Download SDF File 
Download CCD File 
A
(5~{S},7~{R})-3-azanyladamantan-1-ol
C10 H17 N O
DWPIPTNBOVJYAD-FIRGSJFUSA-N
 Ligand Interaction
LOT
Query on LOT

Download SDF File 
Download CCD File 
A
6-[2,5-bis(oxidanylidene)pyrrolidin-1-yl]pyridine-3-sulfonamide
C9 H9 N3 O4 S
LBSDOHDMKVMJLR-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.31 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.221 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 80.893α = 90.00
b = 102.685β = 90.00
c = 103.687γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
DIALSdata reduction
PHENIXrefinement
DIALSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
British Heart FoundationUnited KingdomSP/14/2/30922

Revision History 

  • Version 1.0: 2019-10-02
    Type: Initial release