6SOG | pdb_00006sog

BamABCDE in MSP1D1 nanodisc ensemble 1-6

PDB DOI: https://doi.org/10.2210/pdb6SOG/pdb
EM Map EMD-10274: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Escherichia coli
Expression System: Escherichia coli
Mutation(s): No
Membrane Protein: Yes OPM PDBTM mpstruc

Deposited: 2019-08-29 Released: 2021-03-31
Deposition Author(s): Iadanza, M.G., Ranson, N.A., Radford, S.E., Higgins, A.J., Calabrese, A.N., Schiffrin, B., White, P.
Funding Organization(s): Medical Research Council (United Kingdom), Wellcome Trust

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 8.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

BamABCDE in MSP1D1 nanodisc ensemble 1-6

Iadanza, M.G., Ranson, N.A.

To be published.

Macromolecule Content

Total Structure Weight: 168.31 kDa
Atom Count: 11,866
Modeled Residue Count: 1,518
Deposited Residue Count: 1,518
Unique protein chains: 5

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer membrane protein assembly factor BamA	A	783	Escherichia coli	Mutation(s): 0 Gene Names: bamA, yaeT, ECS88_0187 Membrane Entity: Yes
UniProt
Find proteins for P0A940 (Escherichia coli (strain K12)) Explore P0A940 Go to UniProtKB: P0A940
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0A940
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer membrane protein assembly factor BamB	B	371	Escherichia coli	Mutation(s): 0 Gene Names: bamB, C4J69_10710 Membrane Entity: Yes
UniProt
Find proteins for P77774 (Escherichia coli (strain K12)) Explore P77774 Go to UniProtKB: P77774
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P77774
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer membrane protein assembly factor BamC	C	59	Escherichia coli	Mutation(s): 0 Gene Names: bamC, C9186_08245 Membrane Entity: Yes
UniProt
Find proteins for P0A903 (Escherichia coli (strain K12)) Explore P0A903 Go to UniProtKB: P0A903
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0A903
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer membrane protein assembly factor BamD	D	218	Escherichia coli	Mutation(s): 0 Gene Names: bamD, yfiO, Z3889, ECs3458 Membrane Entity: Yes
UniProt
Find proteins for P0AC02 (Escherichia coli (strain K12)) Explore P0AC02 Go to UniProtKB: P0AC02
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0AC02
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer membrane protein assembly factor BamE	E	87	Escherichia coli	Mutation(s): 0 Gene Names: bamE, smpA, c3139 Membrane Entity: Yes
UniProt
Find proteins for P0A937 (Escherichia coli (strain K12)) Explore P0A937 Go to UniProtKB: P0A937
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0A937
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 8.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	MDFF
MODEL REFINEMENT	PHENIX
RECONSTRUCTION	RELION

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2021-03-31

Deposition Author(s):

Funding Organization	Location	Grant Number
Medical Research Council (United Kingdom)	United Kingdom	MR/P018491/1
Wellcome Trust	United Kingdom	090932/Z/09/Z
Wellcome Trust	United Kingdom	094232/Z/10/Z
Wellcome Trust	United Kingdom	105220/Z/14/Z