6SM5 | pdb_00006sm5

MbC/SHP1-C-SH2 complex

PDB DOI: https://doi.org/10.2210/pdb6SM5/pdb

Classification: BIOSYNTHETIC PROTEIN
Organism(s): Homo sapiens, synthetic construct
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2019-08-21 Released: 2021-01-13
Deposition Author(s): Mann, G., Hantschel, O.
Funding Organization(s): European Research Council

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.75 Å
R-Value Free:
0.276 (Depositor), 0.279 (DCC)
R-Value Work:
0.219 (Depositor), 0.223 (DCC)
R-Value Observed:
0.225 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 6SM5

This is version 1.1 of the entry. See complete history.

Literature

MbC/SHP1-C-SH2 complex

Hantschel, O.

To be published.

Macromolecule Content

Total Structure Weight: 23.26 kDa
Atom Count: 1,557
Modeled Residue Count: 197
Deposited Residue Count: 213
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tyrosine-protein phosphatase non-receptor type 6	A	120	Homo sapiens	Mutation(s): 0 Gene Names: PTPN6, HCP, PTP1C EC: 3.1.3.48
UniProt & NIH Common Fund Data Resources
Find proteins for P29350 (Homo sapiens) Explore P29350 Go to UniProtKB: P29350
PHAROS: P29350 GTEx: ENSG00000111679
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P29350
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
MbC (monobody targeting SHP1-C-SH2)	B	93	synthetic construct	Mutation(s): 0

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.75 Å
R-Value Free: 0.276 (Depositor), 0.279 (DCC)
R-Value Work: 0.219 (Depositor), 0.223 (DCC)
R-Value Observed: 0.225 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.898	α = 90
b = 63.82	β = 90
c = 73.101	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2021-01-13

Deposition Author(s):

Funding Organization	Location	Grant Number
European Research Council		--

Revision History (Full details and data files)

Version 1.0: 2021-01-13
Type: Initial release
Version 1.1: 2024-01-24
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.