6SLC | pdb_00006slc

Mutations in SsgB correlate to longitudinal cell division during sporulation of Streptomyces coelicolor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 
    0.256 (Depositor), 0.263 (DCC) 
  • R-Value Work: 
    0.208 (Depositor), 0.216 (DCC) 

Starting Model: experimental
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This is version 1.3 of the entry. See complete history

Literature

Ectopic positioning of the cell division plane is associated with single amino acid substitutions in the FtsZ-recruiting SsgB in Streptomyces .

Xiao, X.Willemse, J.Voskamp, P.Li, X.Prota, A.E.Lamers, M.Pannu, N.Abrahams, J.P.van Wezel, G.P.

(2021) Open Biol 11: 200409-200409

  • DOI: https://doi.org/10.1098/rsob.200409
  • Primary Citation Related Structures: 
    6SLC

  • PubMed Abstract: 

    In most bacteria, cell division begins with the polymerization of the GTPase FtsZ at mid-cell, which recruits the division machinery to initiate cell constriction. In the filamentous bacterium Streptomyces , cell division is positively controlled by SsgB, which recruits FtsZ to the future septum sites and promotes Z-ring formation. Here, we show that various amino acid (aa) substitutions in the highly conserved SsgB protein result in ectopically placed septa that sever spores diagonally or along the long axis, perpendicular to the division plane. Fluorescence microscopy revealed that between 3.3% and 9.8% of the spores of strains expressing SsgB E120 variants were severed ectopically. Biochemical analysis of SsgB variant E120G revealed that its interaction with FtsZ had been maintained. The crystal structure of Streptomyces coelicolor SsgB was resolved and the key residues were mapped on the structure. Notably, residue substitutions (V115G, G118V, E120G) that are associated with septum misplacement localize in the α 2- α 3 loop region that links the final helix and the rest of the protein. Structural analyses and molecular simulation revealed that these residues are essential for maintaining the proper angle of helix α 3. Our data suggest that besides altering FtsZ, aa substitutions in the FtsZ-recruiting protein SsgB also lead to diagonally or longitudinally divided cells in Streptomyces .


  • Organizational Affiliation
    • Molecular Biotechnology, Leiden University, PO Box 9505, 2300RA Leiden, The Netherlands.

Macromolecule Content 

  • Total Structure Weight: 53.18 kDa 
  • Atom Count: 3,138 
  • Modeled Residue Count: 378 
  • Deposited Residue Count: 471 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Sporulation and cell division protein SsgAA [auth AAA],
B [auth BBB],
C [auth CCC]
157Streptomyces sp. Ag82_O1-9Mutation(s): 0 
Gene Names: BX279_7474

Small Molecules

Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PEG
(Subject of Investigation/LOI)

Query on PEG



Download:Ideal Coordinates CCD File
D [auth AAA]
H [auth AAA]
K [auth BBB]
M [auth BBB]
S [auth CCC]
D [auth AAA],
H [auth AAA],
K [auth BBB],
M [auth BBB],
S [auth CCC],
W [auth CCC]
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
PO4
(Subject of Investigation/LOI)

Query on PO4



Download:Ideal Coordinates CCD File
Q [auth BBB]PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
GOL
(Subject of Investigation/LOI)

Query on GOL



Download:Ideal Coordinates CCD File
E [auth AAA]
F [auth AAA]
G [auth AAA]
I [auth AAA]
J [auth BBB]
E [auth AAA],
F [auth AAA],
G [auth AAA],
I [auth AAA],
J [auth BBB],
L [auth BBB],
N [auth BBB],
O [auth BBB],
P [auth BBB],
R [auth CCC],
T [auth CCC],
U [auth CCC],
V [auth CCC],
X [auth CCC]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free:  0.256 (Depositor), 0.263 (DCC) 
  • R-Value Work:  0.208 (Depositor), 0.216 (DCC) 
Space Group: I 4
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 155.471α = 90
b = 155.471β = 90
c = 53.753γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-08-26
    Type: Initial release
  • Version 1.1: 2021-03-31
    Changes: Database references
  • Version 1.2: 2022-04-13
    Changes: Database references, Derived calculations
  • Version 1.3: 2024-01-24
    Changes: Data collection, Refinement description