6SJV

Structure of HPV18 E6 oncoprotein in complex with mutant E6AP LxxLL motif


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.203 

wwPDB Validation   3D Report Full Report


This is version 2.1 of the entry. See complete history


Literature

Cellular target recognition by HPV18 and HPV49 oncoproteins

Suarez, I.P.Bonhoure, A.Cousido-Siah, A.Chebaro, Y.Kostmann, C.Eberling, P.Altschuh, D.Mitschler, A.Podjarny, A.Trave, G.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Maltodextrin-binding protein,Protein E6,Ubiquitin-protein ligase E3AA543Escherichia coliHuman papillomavirus type 18Homo sapiens
This entity is chimeric
Mutation(s): 7 
Gene Names: malEEPS91_05465NCTC8450_00456NCTC9775_03059E6UBE3AE6APEPVE6APHPVE6A
EC: 2.3.2.26
UniProt & NIH Common Fund Data Resources
Find proteins for A0A376KDN7 (Escherichia coli)
Explore A0A376KDN7 
Go to UniProtKB:  A0A376KDN7
Find proteins for P06463 (Human papillomavirus type 18)
Explore P06463 
Go to UniProtKB:  P06463
Find proteins for Q05086 (Homo sapiens)
Explore Q05086 
Go to UniProtKB:  Q05086
PHAROS:  Q05086
GTEx:  ENSG00000114062 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsQ05086P06463A0A376KDN7
Protein Feature View
Expand
  • Reference Sequence
Oligosaccharides

Help

Entity ID: 2
MoleculeChainsChain Length2D DiagramGlycosylation3D Interactions
alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranoseB 2N/A Oligosaccharides Interaction
Glycosylation Resources
GlyTouCan:  G07411ON
GlyCosmos:  G07411ON
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download Ideal Coordinates CCD File 
C [auth A],
D [auth A]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2
IDChainsNameType/Class2D Diagram3D Interactions
PRD_900001
Query on PRD_900001
Balpha-maltoseOligosaccharide / Nutrient Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.203 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 106.825α = 90
b = 106.825β = 90
c = 100.377γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
French League Against CancerFranceequipe labellisee 2015 and fellowship AB
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesR01CA134737
Foundation for Medical ResearchFrancefellowship to IPS

Revision History  (Full details and data files)

  • Version 1.0: 2019-09-04
    Type: Initial release
  • Version 2.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary
  • Version 2.1: 2022-03-30
    Changes: Author supporting evidence, Database references, Structure summary