6SJV

Structure of HPV18 E6 oncoprotein in complex with mutant E6AP LxxLL motif


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.029 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.203 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Cellular target recognition by HPV18 and HPV49 oncoproteins

Suarez, I.P.Bonhoure, A.Cousido-Siah, A.Chebaro, Y.Kostmann, C.Eberling, P.Altschuh, D.Mitschler, A.Podjarny, A.Trave, G.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Maltodextrin-binding protein,Protein E6,Ubiquitin-protein ligase E3A
A
543Escherichia coliHuman papillomavirus type 18Homo sapiens
This entity is chimeric
Mutation(s): 7 
Gene Names: malE, E6, UBE3A (E6AP, EPVE6AP, HPVE6A)
EC: 2.3.2.26
Find proteins for A0A376KDN7 (Escherichia coli)
Go to UniProtKB:  A0A376KDN7
Find proteins for P06463 (Human papillomavirus type 18)
Go to UniProtKB:  P06463
Find proteins for Q05086 (Homo sapiens)
Go to Gene View: UBE3A
Go to UniProtKB:  Q05086
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MAL
Query on MAL

Download SDF File 
Download CCD File 
A
MALTOSE
C12 H22 O11
GUBGYTABKSRVRQ-ASMJPISFSA-N
 Ligand Interaction
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.029 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.203 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 106.825α = 90.00
b = 106.825β = 90.00
c = 100.377γ = 120.00
Software Package:
Software NamePurpose
XDSdata reduction
PHASERphasing
PHENIXrefinement
XDSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
French League Against CancerFranceequipe labellisee 2015 and fellowship AB
National Institutes of Health/National Cancer InstituteUnited StatesR01CA134737
Foundation for Medical ResearchFrancefellowship to IPS

Revision History 

  • Version 1.0: 2019-09-04
    Type: Initial release