6SJH

Structure of the PRY-SPRY domain of human Trim16L/Trim70

PDB DOI: https://doi.org/10.2210/pdb6SJH/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2019-08-13 Released: 2021-02-24
Deposition Author(s): Mikkelsen, J.H., Andersen, C.B.F.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.212
R-Value Work: 0.181
R-Value Observed: 0.182

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure of the PRY-SPRY domain of human Trim16L/Trim70

Mikkelsen, J.H., Andersen, C.B.F.

To be published.

Macromolecule Content

Total Structure Weight: 66.95 kDa
Atom Count: 5,410
Modelled Residue Count: 561
Deposited Residue Count: 570
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tripartite motif-containing protein 16-like protein	A, B, C	190	Homo sapiens	Mutation(s): 0 Gene Names: TRIM16L, TRIM70
UniProt
Find proteins for Q309B1 (Homo sapiens) Explore Q309B1 Go to UniProtKB: Q309B1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q309B1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.212
R-Value Work: 0.181
R-Value Observed: 0.182
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 72.78	α = 90
b = 95.77	β = 90
c = 116.09	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2021-02-24

Deposition Author(s):

Mikkelsen, J.H.

Andersen, C.B.F.

Revision History (Full details and data files)

Version 1.0: 2021-02-24
Type: Initial release
Version 1.1: 2024-01-24
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.