6SJH | pdb_00006sjh

Structure of the PRY-SPRY domain of human Trim16L/Trim70

• PDB DOI: https://doi.org/10.2210/pdb6SJH/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2019-08-13 Released: 2021-02-24 
• Deposition Author(s): Mikkelsen, J.H., Andersen, C.B.F.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free: 
  0.212 (Depositor), 0.190 (DCC) 
• R-Value Work: 
  0.181 (Depositor), 0.160 (DCC) 
• R-Value Observed: 
  0.182 (Depositor) 

Starting Model: experimental

Literature

Structure of the PRY-SPRY domain of human Trim16L/Trim70

Mikkelsen, J.H., Andersen, C.B.F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 66.95 kDa 
• Atom Count: 5,410 
• Modeled Residue Count: 561 
• Deposited Residue Count: 570 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tripartite motif-containing protein 16-like protein	A, B, C	190	Homo sapiens	Mutation(s): 0  Gene Names: TRIM16L, TRIM70
UniProt
Find proteins for Q309B1 (Homo sapiens) Explore Q309B1  Go to UniProtKB:  Q309B1

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free:  0.212 (Depositor), 0.190 (DCC) 
• R-Value Work:  0.181 (Depositor), 0.160 (DCC) 
• R-Value Observed: 0.182 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 72.78	α = 90
b = 95.77	β = 90
c = 116.09	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2021-02-24 
Deposition Author(s): Mikkelsen, J.H., Andersen, C.B.F.

Revision History  

• Version 1.0: 2021-02-24
  Type: Initial release
  
• Version 1.1: 2024-01-24
  Changes: Data collection, Database references, Refinement description