6SIV

Structure of HPV16 E6 oncoprotein in complex with mutant IRF3 LxxLL motif


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.752 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.182 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Deciphering the molecular and structural interaction between IRF3 and HPV16 E6

Poirson, J.Suarez, I.P.Cousido-Siah, A.Forster, A.Chebaro, Y.Mitschler, A.Straub, M.Altschuh, D.Podjarny, A.Trave, G.Masson, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Maltose/maltodextrin-binding periplasmic protein,Interferon regulatory factor 3
A
383Homo sapiensEscherichia coli (strain K12)
This entity is chimeric
Mutation(s): 6 
Gene Names: IRF3, malE
Find proteins for Q14653 (Homo sapiens)
Go to Gene View: IRF3
Go to UniProtKB:  Q14653
Find proteins for P0AEX9 (Escherichia coli (strain K12))
Go to UniProtKB:  P0AEX9
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Protein E6
B
153Human papillomavirus type 16Mutation(s): 5 
Gene Names: E6
Find proteins for P03126 (Human papillomavirus type 16)
Go to UniProtKB:  P03126
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
GLC
Query on GLC

Download SDF File 
Download CCD File 
A
ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.752 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.182 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 97.031α = 90.00
b = 132.467β = 90.00
c = 42.634γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
XDSdata reduction
PHENIXrefinement
XDSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
French League Against CancerFranceequipe labellisee 2015 and fellowship AB
National Institutes of Health/National Cancer InstituteUnited StatesR01CA134737
Foundation for Medical ResearchFrancefellowship to IPS

Revision History 

  • Version 1.0: 2019-08-21
    Type: Initial release