Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

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Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - AB 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: surface plasmon resonance

Macromolecule Content

• Total Structure Weight: 61275.05 
• Atom Count: 4169 
• Residue Count: 536 
• Unique protein chains: 2

6SIV

Structure of HPV16 E6 oncoprotein in complex with mutant IRF3 LxxLL motif

• DOI: 10.2210/pdb6SIV/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Human papillomavirus type 16, Homo sapiens, Escherichia coli (strain K12)
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): 11 


• Deposited: 2019-08-12 Released: 2019-08-21 
• Deposition Author(s): Suarez, I.P., Cousido-Siah, A., Bonhoure, A., Mitschler, A., Podjarny, A., Trave, G.
• Funding Organization(s): French League Against Cancer; National Institutes of Health/National Cancer Institute; Foundation for Medical Research 

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.752 Å
• R-Value Free: 0.220 
• R-Value Work: 0.182 

Literature

Deciphering the molecular and structural interaction between IRF3 and HPV16 E6

Poirson, J., Suarez, I.P., Cousido-Siah, A., Forster, A., Chebaro, Y., Mitschler, A., Straub, M., Altschuh, D., Podjarny, A., Trave, G., Masson, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Maltose/maltodextrin-binding periplasmic protein,Interferon regulatory factor 3	A	383	Homo sapiens, Escherichia coli (strain K12) This entity is chimeric	Mutation(s): 6  Gene Names: IRF3, malE
Find proteins for Q14653 (Homo sapiens) Go to Gene View: IRF3 Go to UniProtKB:  Q14653
Find proteins for P0AEX9 (Escherichia coli (strain K12)) Go to UniProtKB:  P0AEX9

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
Protein E6	B	153	Human papillomavirus type 16	Mutation(s): 5  Gene Names: E6
Find proteins for P03126 (Human papillomavirus type 16) Go to UniProtKB:  P03126

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
ZN	B	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
GLC	A	ALPHA-D-GLUCOSE C6 H12 O6 WQZGKKKJIJFFOK-DVKNGEFBSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.752 Å
• R-Value Free: 0.220 
• R-Value Work: 0.182 
• Space Group: P 2₁ 2₁ 2

Unit Cell:

Length (Å)	Angle (°)
a = 97.031	α = 90.00
b = 132.467	β = 90.00
c = 42.634	γ = 90.00

Software Package:

Software Name	Purpose
PHASER	phasing
XDS	data reduction
PHENIX	refinement
XDS	data scaling

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2019-08-12 
• Released Date: 2019-08-21 
• Deposition Author(s): Suarez, I.P., Cousido-Siah, A., Bonhoure, A., Mitschler, A., Podjarny, A., Trave, G.

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Funding Organization	Location	Grant Number
French League Against Cancer	France	equipe labellisee 2015 and fellowship AB
National Institutes of Health/National Cancer Institute	United States	R01CA134737
Foundation for Medical Research	France	fellowship to IPS

Revision History 

• Version 1.0: 2019-08-21
  Type: Initial release