6SHK

High resolution structure of the antimicrobial peptide Dermcidin from human

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.281 
  • R-Value Observed: 0.281 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Crystal Structure and Functional Mechanism of a Human Antimicrobial Membrane Channel

Zeth, K.

To be published.

Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Dermcidin48Homo sapiensMutation(s): 0 
Gene Names: DCD, AIDD, DSEP
EC: 3.4
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P81605 (Homo sapiens)
Explore P81605 
Go to UniProtKB:  P81605
PHAROS:  P81605
GTEx:  ENSG00000161634 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP81605
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.281 
  • R-Value Observed: 0.281 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 50.758α = 90
b = 50.758β = 90
c = 105.88γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
XDSdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History 

Deposition Data

  • Released Date: 2019-09-25 
    • Deposition Author(s): Zeth, K.

Revision History  (Full details and data files)

  • Version 1.0: 2019-09-25
    Type: Initial release