6SHK

High resolution structure of the antimicrobial peptide Dermcidin from human


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.281 
  • R-Value Observed: 0.281 

wwPDB Validation 3D Report Full Report



Literature

Crystal Structure and Functional Mechanism of a Human Antimicrobial Membrane Channel

Zeth, K.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
DermcidinA48Homo sapiensMutation(s): 0 
Gene Names: DCDAIDDDSEP
EC: 3.4
Find proteins for P81605 (Homo sapiens)
Explore P81605 
Go to UniProtKB:  P81605
NIH Common Fund Data Resources
PHAROS  P81605
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.281 
  • R-Value Observed: 0.281 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 50.758α = 90
b = 50.758β = 90
c = 105.88γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
XDSdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 2019-08-07 
  • Released Date: 2019-09-25 
  • Deposition Author(s): Zeth, K.

Revision History 

  • Version 1.0: 2019-09-25
    Type: Initial release