6S8M

S. pombe microtubule decorated with Cut7 motor domain in the AMPPNP state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.50 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history

Re-refinement Note

This entry reflects an alternative modeling of the original data in:5mlv


Literature

Corrigendum to "Cryo-EM Structure (4.5 angstrom ) of Yeast Kinesin-5-Microtubule Complex Reveals a Distinct Binding Footprint and Mechanism of Drug Resistance" [J. Mol. Biol. 431 (2019) 864-872] https://doi.org/10.1016/j.jmb.2019.01.011.

von Loeffelholz, O.Pena, A.Drummond, D.R.Cross, R.Moores, C.A.

(2020) J Mol Biol 432: 632-632


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Kinesin-like protein cut7A [auth K]438Schizosaccharomyces pombeMutation(s): 0 
Gene Names: cut7SPAC25G10.07c
UniProt
Find proteins for P24339 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
Explore P24339 
Go to UniProtKB:  P24339
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Tubulin beta chainB448Schizosaccharomyces pombeMutation(s): 0 
Gene Names: nda3alp12SPBC26H8.07c
UniProt
Find proteins for P05219 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
Explore P05219 
Go to UniProtKB:  P05219
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Tubulin alpha-1 chainC [auth A]455Schizosaccharomyces pombeMutation(s): 0 
Gene Names: nda2SPBC16A3.15c
UniProt
Find proteins for P04688 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
Explore P04688 
Go to UniProtKB:  P04688
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GTP
Query on GTP

Download Ideal Coordinates CCD File 
H [auth A]GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
 Ligand Interaction
EPB
Query on EPB

Download Ideal Coordinates CCD File 
G [auth B]7,11-DIHYDROXY-8,8,10,12,16-PENTAMETHYL-3-[1-METHYL-2-(2-METHYL-THIAZOL-4-YL)VINYL]-4,17-DIOXABICYCLO[14.1.0]HEPTADECANE-5,9-DIONE
C27 H41 N O6 S
QXRSDHAAWVKZLJ-PVYNADRNSA-N
 Ligand Interaction
ANP
Query on ANP

Download Ideal Coordinates CCD File 
E [auth K]PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
 Ligand Interaction
GDP
Query on GDP

Download Ideal Coordinates CCD File 
F [auth B]GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
 Ligand Interaction
MG
Query on MG

Download Ideal Coordinates CCD File 
D [auth K]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.50 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research CouncilUnited KingdomL00190X/1

Revision History  (Full details and data files)

  • Version 1.0: 2019-08-21
    Type: Initial release
  • Version 1.1: 2020-03-04
    Changes: Database references