6RW7

An AA10 LPMO from the shipworm symbiont Teredinibacter turnerae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.175 
  • R-Value Work: 0.152 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Discovery, activity and characterisation of an AA10 lytic polysaccharide oxygenase from the shipworm symbiontTeredinibacter turnerae.

Fowler, C.A.Sabbadin, F.Ciano, L.Hemsworth, G.R.Elias, L.Bruce, N.McQueen-Mason, S.Davies, G.J.Walton, P.H.

(2019) Biotechnol Biofuels 12: 232-232

  • DOI: 10.1186/s13068-019-1573-x

  • PubMed Abstract: 
  • The quest for novel enzymes for cellulosic biomass-degradation has recently been focussed on lytic polysaccharide monooxygenases (LPMOs/PMOs), Cu-containing proteins that catalyse the oxidative degradation of otherwise recalcitrant polysaccharides us ...

    The quest for novel enzymes for cellulosic biomass-degradation has recently been focussed on lytic polysaccharide monooxygenases (LPMOs/PMOs), Cu-containing proteins that catalyse the oxidative degradation of otherwise recalcitrant polysaccharides using O 2 or H 2 O 2 as a co-substrate.


    Organizational Affiliation

    1Department of Chemistry, University of York, York, YO10 5DD UK.,4Present Address: Astbury Centre for Structural Molecular Biology and School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT UK.,2Department of Biology, Centre for Novel Agricultural Products, University of York, York, YO10 5DD UK.,3Present Address: School of Chemistry and Photon Science Institute, University of Manchester, Oxford Road, Manchester, M13 9PL UK.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Carbohydrate binding module family 33 and 10 domain protein
A
212Teredinibacter turnerae (strain ATCC 39867 / T7901)Mutation(s): 0 
Find proteins for C5BKQ9 (Teredinibacter turnerae (strain ATCC 39867 / T7901))
Go to UniProtKB:  C5BKQ9
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
CU1
Query on CU1

Download SDF File 
Download CCD File 
A
COPPER (I) ION
Cu
VMQMZMRVKUZKQL-UHFFFAOYSA-N
 Ligand Interaction
CU
Query on CU

Download SDF File 
Download CCD File 
A
COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.175 
  • R-Value Work: 0.152 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 36.644α = 90.00
b = 62.516β = 99.13
c = 43.185γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
xia2data reduction
REFMACrefinement
CRANK2phasing
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/L001926/1

Revision History 

  • Version 1.0: 2019-10-09
    Type: Initial release
  • Version 1.1: 2019-10-16
    Type: Data collection, Database references