6RHT

Structure of Pediococcus acidilactici putative lactate oxidase WT protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.190 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

FMN-dependent oligomerization of putative lactate oxidase from Pediococcus acidilactici

Ashok, Y.Maksimainen, M.M.Kallio, T.Kilpelainen, P.Lehtio, L.

(2020) Plos One --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Putative L-lactate oxidase
A
370Pediococcus acidilactici DSM 20284Mutation(s): 0 
Gene Names: lctO
EC: 1.1.99.-
Find proteins for E0NE46 (Pediococcus acidilactici DSM 20284)
Go to UniProtKB:  E0NE46
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FMN
Query on FMN

Download SDF File 
Download CCD File 
A
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.190 
  • Space Group: I 4 2 2
Unit Cell:
Length (Å)Angle (°)
a = 135.240α = 90.00
b = 135.240β = 90.00
c = 124.840γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
PHASERphasing
REFMACrefinement
XDSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Academy of FinlandFinland--

Revision History 

  • Version 1.0: 2020-02-12
    Type: Initial release