6R8K

Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikD with an engineered HMA domain of Pikp-1 from rice (Oryza sativa)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.197 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Protein engineering expands the effector recognition profile of a rice NLR immune receptor

De la Concepcion, J.C.Franceschetti, M.Terauchi, R.Kamoun, S.Banfield, M.J.

(2019) Biorxiv --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
NBS-LRR class disease resistance protein Pikh-1
B
80Oryza sativa subsp. japonicaMutation(s): 0 
Gene Names: Pi-km1 (Pikh-1)
Find proteins for D5L9G5 (Oryza sativa subsp. japonica)
Go to UniProtKB:  D5L9G5
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
AVR-Pik protein
C
93Magnaporthe oryzaeMutation(s): 0 
Gene Names: AVR-Pik (AvrPik, Pikm, Pikp)
Find proteins for C4B8B8 (Magnaporthe oryzae)
Go to UniProtKB:  C4B8B8
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.197 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 29.790α = 90.00
b = 65.330β = 90.00
c = 75.860γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
REFMACrefinement
Aimlessdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/J004553
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/P012574
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/M02198X
European Research CouncilUnited Kingdom743165
Japan Society for the Promotion of ScienceJapanKAKENHI 15H05779

Revision History 

  • Version 1.0: 2019-04-24
    Type: Initial release