6R7T

Crystal Structure of human Melanoma-associated antigen B1 (MAGEB1) in complex with nanobody


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.68 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.258 
  • R-Value Observed: 0.259 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal Structure of Melanoma-associated antigen B1 (MAGEB1) in complex with nanobody

Ye, M.Newman, J.Pike, A.C.W.Burgess-Brown, N.Cooper, C.D.O.Bountra, C.Arrowsmith, C.Edwards, A.Gileadi, O.von Delft, F.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
anti MAGEB1 nanobodyA123Lama glamaMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Melanoma-associated antigen B1B251Homo sapiensMutation(s): 0 
Gene Names: MAGEB1MAGEL1MAGEXP
UniProt & NIH Common Fund Data Resources
Find proteins for P43366 (Homo sapiens)
Explore P43366 
Go to UniProtKB:  P43366
PHAROS:  P43366
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP43366
Protein Feature View
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.68 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.258 
  • R-Value Observed: 0.259 
  • Space Group: P 61 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 61.976α = 90
b = 61.976β = 90
c = 361.001γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
DIALSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2019-05-01
    Type: Initial release
  • Version 1.1: 2019-05-29
    Changes: Data collection, Database references, Refinement description, Structure summary
  • Version 1.2: 2019-08-21
    Changes: Data collection