6R6P

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.1 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural and mutational analysis of the ribosome-arresting human XBP1u.

Shanmuganathan, V.Schiller, N.Magoulopoulou, A.Cheng, J.Braunger, K.Cymer, F.Berninghausen, O.Beatrix, B.Kohno, K.Heijne, G.V.Beckmann, R.

(2019) Elife 8: --

  • DOI: 10.7554/eLife.46267
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • XBP1u, a central component of the unfolded protein response (UPR), is a mammalian protein containing a functionally critical translational arrest peptide (AP). Here, we present a 3 Å cryo-EM structure of the stalled human XBP1u AP. It forms a unique ...

    XBP1u, a central component of the unfolded protein response (UPR), is a mammalian protein containing a functionally critical translational arrest peptide (AP). Here, we present a 3 Å cryo-EM structure of the stalled human XBP1u AP. It forms a unique turn in the ribosomal exit tunnel proximal to the peptidyl transferase center where it causes a subtle distortion, thereby explaining the temporary translational arrest induced by XBP1u. During ribosomal pausing the hydrophobic region 2 (HR2) of XBP1u is recognized by SRP, but fails to efficiently gate the Sec61 translocon. An exhaustive mutagenesis scan of the XBP1u AP revealed that only 8 out of 20 mutagenized positions are optimal; in the remaining 12 positions, we identify 55 different mutations increase the level of translational arrest. Thus, the wildtype XBP1u AP induces only an intermediate level of translational arrest, allowing efficient targeting by SRP without activating the Sec61 channel.


    Organizational Affiliation

    Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.,Institute for Research Initiatives, Nara Institute of Science and Technology, Ikoma, Japan.,Gene Center, Department of Biochemistry, Ludwig Maximilian University of Munich, Munich, Germany.




Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
uL2
A
244Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL8
Find proteins for G1TT27 (Oryctolagus cuniculus)
Go to Gene View: RPL8
Go to UniProtKB:  G1TT27
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
uL3
B
394Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL3
Find proteins for G1TL06 (Oryctolagus cuniculus)
Go to Gene View: RPL3
Go to UniProtKB:  G1TL06
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
uL4
C
362Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL4
Find proteins for G1SVW5 (Oryctolagus cuniculus)
Go to Gene View: RPL4
Go to UniProtKB:  G1SVW5
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L5
D
292Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100341713
Find proteins for G1SYJ6 (Oryctolagus cuniculus)
Go to UniProtKB:  G1SYJ6
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L6
E
248Oryctolagus cuniculusMutation(s): 0 
Find proteins for G1TG04 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TG04
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
uL30
F
225Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL7
Find proteins for G1SV32 (Oryctolagus cuniculus)
Go to Gene View: RPL7
Go to UniProtKB:  G1SV32
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
eL8
G
241Oryctolagus cuniculusMutation(s): 0 
Find proteins for G1STW0 (Oryctolagus cuniculus)
Go to UniProtKB:  G1STW0
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
uL6
H
190Oryctolagus cuniculusMutation(s): 0 
Find proteins for G1TX33 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TX33
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein L10 (Predicted)
I
213Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL10
Find proteins for B7NZQ2 (Oryctolagus cuniculus)
Go to Gene View: RPL10
Go to UniProtKB:  B7NZQ2
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
uL5
J
169Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL11
Find proteins for G1TUB8 (Oryctolagus cuniculus)
Go to Gene View: RPL11
Go to UniProtKB:  G1TUB8
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L13
L
210Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100342098
Find proteins for G1TPV0 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TPV0
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein L14
M
138Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL14
Find proteins for U3KNW6 (Oryctolagus cuniculus)
Go to Gene View: RPL14
Go to UniProtKB:  U3KNW6
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein L15
N
203Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL15 (LOC100358370)
Find proteins for G1T0C1 (Oryctolagus cuniculus)
Go to Gene View: RPL15
Go to UniProtKB:  G1T0C1
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
uL13
O
199N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetails
uL22
P
153Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC108175352
Find proteins for G1TVT6 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TVT6
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetails
eL18
Q
187Oryctolagus cuniculusMutation(s): 0 
Find proteins for G1TX70 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TX70
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetails
eL19
R
180N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetails
eL20
S
175N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetails
eL21
T
159Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC108175794 (LOC100343039)
Find proteins for G1SHQ2 (Oryctolagus cuniculus)
Go to UniProtKB:  G1SHQ2
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein L22
U
99Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL22
Find proteins for G1TSG1 (Oryctolagus cuniculus)
Go to Gene View: RPL22
Go to UniProtKB:  G1TSG1
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetails
uL14
V
131Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL23
Find proteins for G1T6D1 (Oryctolagus cuniculus)
Go to Gene View: RPL23
Go to UniProtKB:  G1T6D1
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein L24
W
63Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL24
Find proteins for G1SE28 (Oryctolagus cuniculus)
Go to Gene View: RPL24
Go to UniProtKB:  G1SE28
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetails
uL23
X
119Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC108177184 (LOC108177974)
Find proteins for G1SE76 (Oryctolagus cuniculus)
Go to UniProtKB:  G1SE76
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein L26
Y
134Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL26
Find proteins for G1SQH0 (Oryctolagus cuniculus)
Go to Gene View: RPL26
Go to UniProtKB:  G1SQH0
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L27
Z
135Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100356974 (RPL27)
Find proteins for G1TXF6 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TXF6
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetails
uL15
a
147Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL27A
Find proteins for G1SNY0 (Oryctolagus cuniculus)
Go to Gene View: RPL27A
Go to UniProtKB:  G1SNY0
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L29
b
75Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100350215
Find proteins for G1TN82 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TN82
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetails
eL30
c
94N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetails
eL31
d
107Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL31
Find proteins for G1SHG0 (Oryctolagus cuniculus)
Go to Gene View: RPL31
Go to UniProtKB:  G1SHG0
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetails
eL32
e
128Oryctolagus cuniculusMutation(s): 0 
Find proteins for G1TUN8 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TUN8
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetails
eL33
f
109Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL35A
Find proteins for G1SF08 (Oryctolagus cuniculus)
Go to Gene View: RPL35A
Go to UniProtKB:  G1SF08
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetails
eL34
g
114Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100354714
Find proteins for G1U945 (Oryctolagus cuniculus)
Go to UniProtKB:  G1U945
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetails
uL29
h
122Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL35
Find proteins for G1SIT5 (Oryctolagus cuniculus)
Go to Gene View: RPL35
Go to UniProtKB:  G1SIT5
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L36
i
102Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100348796
Find proteins for G1TTQ5 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TTQ5
Entity ID: 38
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein L37
j
86Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL37
Find proteins for U3KPD5 (Oryctolagus cuniculus)
Go to Gene View: RPL37
Go to UniProtKB:  U3KPD5
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetails
eL38
k
69N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetails
ribosomal protein eL39
l
50Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC108178831
Find proteins for G1SYU7 (Oryctolagus cuniculus)
Go to UniProtKB:  G1SYU7
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetails
eL40
m
52N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetails
60s ribosomal protein l41
n
23Oryctolagus cuniculusMutation(s): 0 
Find proteins for A0A087WNH4 (Oryctolagus cuniculus)
Go to UniProtKB:  A0A087WNH4
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetails
eL42
o
104Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL36A-HNRNPH2
Find proteins for G1T040 (Oryctolagus cuniculus)
Go to UniProtKB:  G1T040
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetails
ribosomal protein eL43
p
91Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100349729
Find proteins for G1SY53 (Oryctolagus cuniculus)
Go to UniProtKB:  G1SY53
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetails
eL28
r
125Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100358162
Find proteins for G1U7L1 (Oryctolagus cuniculus)
Go to UniProtKB:  G1U7L1
Entity ID: 46
MoleculeChainsSequence LengthOrganismDetails
60S acidic ribosomal protein P0
s
198Oryctolagus cuniculusMutation(s): 0 
Find proteins for G1U6N2 (Oryctolagus cuniculus)
Go to UniProtKB:  G1U6N2
Entity ID: 47
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein L12
t
163Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL12
Find proteins for G1SMR7 (Oryctolagus cuniculus)
Go to Gene View: RPL12
Go to UniProtKB:  G1SMR7
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetails
X-box-binding protein 1
1
24Homo sapiensMutation(s): 0 
Gene Names: XBP1 (TREB5, XBP2)
Find proteins for P17861 (Homo sapiens)
Go to Gene View: XBP1
Go to UniProtKB:  P17861
Entity ID: 52
MoleculeChainsSequence LengthOrganismDetails
uS2
q
217N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 53
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S3a
u
213Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS3A (LOC100342838, LOC100348981)
Find proteins for G1SS70 (Oryctolagus cuniculus)
Go to Gene View: RPS3A
Go to UniProtKB:  G1SS70
Entity ID: 54
MoleculeChainsSequence LengthOrganismDetails
uS5
v
221N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 55
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S4
x
262Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100338112
Find proteins for G1TK17 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TK17
Entity ID: 56
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S6
z
237Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC108178879 (RPS6)
Find proteins for G1TM55 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TM55
Entity ID: 57
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S7
y
189Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS7
Find proteins for G1SVB0 (Oryctolagus cuniculus)
Go to Gene View: RPS7
Go to UniProtKB:  G1SVB0
Entity ID: 58
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S8
CC
206Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100352057
Find proteins for G1TJW1 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TJW1
Entity ID: 59
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein S9 (Predicted)
XX
185Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS9
Find proteins for B7NZS8 (Oryctolagus cuniculus)
Go to Gene View: RPS9
Go to UniProtKB:  B7NZS8
Entity ID: 60
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein S11
EE
151Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS11
Find proteins for G1TRM4 (Oryctolagus cuniculus)
Go to Gene View: RPS11
Go to UniProtKB:  G1TRM4
Entity ID: 61
MoleculeChainsSequence LengthOrganismDetails
ribosomal protein uS15
QQ
149Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS13
Find proteins for G1SP51 (Oryctolagus cuniculus)
Go to Gene View: RPS13
Go to UniProtKB:  G1SP51
Entity ID: 62
MoleculeChainsSequence LengthOrganismDetails
uS11
MM
136N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 63
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein S16
UU
142Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS16
Find proteins for G1SGX4 (Oryctolagus cuniculus)
Go to Gene View: RPS16
Go to UniProtKB:  G1SGX4
Entity ID: 64
MoleculeChainsSequence LengthOrganismDetails
eS17
YY
132Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS17
Find proteins for G1TU13 (Oryctolagus cuniculus)
Go to Gene View: RPS17
Go to UniProtKB:  G1TU13
Entity ID: 65
MoleculeChainsSequence LengthOrganismDetails
eS21
HH
83N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 66
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein S15a
TT
129Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS15A
Find proteins for G1TG89 (Oryctolagus cuniculus)
Go to Gene View: RPS15A
Go to UniProtKB:  G1TG89
Entity ID: 67
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein S23
VV
141Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS23
Find proteins for G1SZ47 (Oryctolagus cuniculus)
Go to Gene View: RPS23
Go to UniProtKB:  G1SZ47
Entity ID: 68
MoleculeChainsSequence LengthOrganismDetails
eS24
NN
124N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 69
MoleculeChainsSequence LengthOrganismDetails
eS26
ZZ
101N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 70
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S27
JJ
83Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100345694 (LOC100345044, LOC100348261, RPS27)
Find proteins for G1TZ76 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TZ76
Entity ID: 71
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S30
AA
55Oryctolagus cuniculusMutation(s): 0 
Gene Names: FAU
Find proteins for G1T8A2 (Oryctolagus cuniculus)
Go to Gene View: FAU
Go to UniProtKB:  G1T8A2
Entity ID: 72
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein S3
DD
228Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS3
Find proteins for G1TNM3 (Oryctolagus cuniculus)
Go to Gene View: RPS3
Go to UniProtKB:  G1TNM3
Entity ID: 73
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein S5
BB
191Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS5
Find proteins for G1TFM5 (Oryctolagus cuniculus)
Go to Gene View: RPS5
Go to UniProtKB:  G1TFM5
Entity ID: 74
MoleculeChainsSequence LengthOrganismDetails
eS10
SS
96Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100348511
Find proteins for G1TPV3 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TPV3
Entity ID: 75
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S12
RR
117Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS12
Find proteins for G1SFR8 (Oryctolagus cuniculus)
Go to Gene View: RPS12
Go to UniProtKB:  G1SFR8
Entity ID: 76
MoleculeChainsSequence LengthOrganismDetails
uS14
9
120Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS15
Find proteins for G1U0Q2 (Oryctolagus cuniculus)
Go to Gene View: RPS15
Go to UniProtKB:  G1U0Q2
Entity ID: 77
MoleculeChainsSequence LengthOrganismDetails
uS13
II
144Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS18
Find proteins for G1SZI5 (Oryctolagus cuniculus)
Go to Gene View: RPS18
Go to UniProtKB:  G1SZI5
Entity ID: 78
MoleculeChainsSequence LengthOrganismDetails
eS19
PP
141Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100345774
Find proteins for G1TN62 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TN62
Entity ID: 79
MoleculeChainsSequence LengthOrganismDetails
uS10
GG
100N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 80
MoleculeChainsSequence LengthOrganismDetails
ribosomal protein eS25
OO
75Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS25
Find proteins for G1TDB3 (Oryctolagus cuniculus)
Go to Gene View: RPS25
Go to UniProtKB:  G1TDB3
Entity ID: 81
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein S28
FF
62Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS28
Find proteins for G1TIB4 (Oryctolagus cuniculus)
Go to Gene View: RPS28
Go to UniProtKB:  G1TIB4
Entity ID: 82
MoleculeChainsSequence LengthOrganismDetails
S29
w
55Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS29
Find proteins for G1U7M4 (Oryctolagus cuniculus)
Go to Gene View: RPS29
Go to UniProtKB:  G1U7M4
Entity ID: 83
MoleculeChainsSequence LengthOrganismDetails
eS31
0
68Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS27A
Find proteins for G1SK22 (Oryctolagus cuniculus)
Go to Gene View: RPS27A
Go to UniProtKB:  G1SK22
Entity ID: 84
MoleculeChainsSequence LengthOrganismDetails
ribosomal protein RACK1
6
313Oryctolagus cuniculusMutation(s): 0 
Gene Names: RACK1
Find proteins for G1SJB4 (Oryctolagus cuniculus)
Go to Gene View: RACK1
Go to UniProtKB:  G1SJB4
Entity ID: 1
MoleculeChainsLengthOrganism
28S ribosomal RNA53662Oryctolagus cuniculus
Entity ID: 2
MoleculeChainsLengthOrganism
5S ribosomal RNA7120Oryctolagus cuniculus
Entity ID: 3
MoleculeChainsLengthOrganism
5.8S ribosomal RNA8156Oryctolagus cuniculus
Entity ID: 49
MoleculeChainsLengthOrganism
A/P-tRNA276Saccharomyces cerevisiae
Entity ID: 50
MoleculeChainsLengthOrganism
P/E-tRNA375Saccharomyces cerevisiae
Entity ID: 51
MoleculeChainsLengthOrganism
18S rRNAK1698Oryctolagus cuniculus
Entity ID: 85
MoleculeChainsLengthOrganism
mRNA410Homo sapiens
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
g, j, m, o, p
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
5, 7, 8, e, g, I, P, Q, V
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.1 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research FoundationGermanyGRK1721

Revision History 

  • Version 1.0: 2019-07-10
    Type: Initial release