6R4O | pdb_00006r4o

Structure of a truncated adenylyl cyclase bound to MANT-GTP, forskolin and an activated stimulatory Galphas protein


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 6R4O

This is version 1.2 of the entry. See complete history

Literature

The structure of a membrane adenylyl cyclase bound to an activated stimulatory G protein.

Qi, C.Sorrentino, S.Medalia, O.Korkhov, V.M.

(2019) Science 364: 389-394

  • DOI: https://doi.org/10.1126/science.aav0778
  • Primary Citation Related Structures: 
    6R3Q, 6R4O, 6R4P

  • PubMed Abstract: 

    Membrane-integral adenylyl cyclases (ACs) are key enzymes in mammalian heterotrimeric GTP-binding protein (G protein)-dependent signal transduction, which is important in many cellular processes. Signals received by the G protein-coupled receptors are conveyed to ACs through G proteins to modulate the levels of cellular cyclic adenosine monophosphate (cAMP). Here, we describe the cryo-electron microscopy structure of the bovine membrane AC9 bound to an activated G protein αs subunit at 3.4-angstrom resolution. The structure reveals the organization of the membrane domain and helical domain that spans between the membrane and catalytic domains of AC9. The carboxyl-terminal extension of the catalytic domain occludes both the catalytic and the allosteric sites of AC9, inducing a conformation distinct from the substrate- and activator-bound state, suggesting a regulatory role in cAMP production.


  • Organizational Affiliation
    • Institute of Biochemistry, ETH Zurich, Zurich, Switzerland.

Macromolecule Content 

  • Total Structure Weight: 219.7 kDa 
  • Atom Count: 9,602 
  • Modeled Residue Count: 1,182 
  • Deposited Residue Count: 1,938 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Adenylate cyclase 91,533Bos taurusMutation(s): 0 
Gene Names: ADCY9BOS_22626
EC: 4.6.1.1
Membrane Entity: Yes 
UniProt
Find proteins for E1BM79 (Bos taurus)
Explore E1BM79 
Go to UniProtKB:  E1BM79
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE1BM79
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(s) subunit alpha isoforms short405Bos taurusMutation(s): 0 
Gene Names: GNASGNAS1
EC: 3.6.5
Membrane Entity: Yes 
UniProt
Find proteins for P04896 (Bos taurus)
Explore P04896 
Go to UniProtKB:  P04896
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP04896
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ONM

Query on ONM



Download:Ideal Coordinates CCD File
C [auth A]3'-O-(N-METHYLANTHRANILOYL)-GUANOSINE-5'-TRIPHOSPHATE
C18 H23 N6 O15 P3
DSPRYHPLXXUNHS-XNIJJKJLSA-N
GSP

Query on GSP



Download:Ideal Coordinates CCD File
G [auth B]5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE
C10 H16 N5 O13 P3 S
XOFLBQFBSOEHOG-UUOKFMHZSA-N
FOK

Query on FOK



Download:Ideal Coordinates CCD File
D [auth A]FORSKOLIN
C22 H34 O7
OHCQJHSOBUTRHG-KGGHGJDLSA-N
MN

Query on MN



Download:Ideal Coordinates CCD File
E [auth A],
F [auth A]
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
MG

Query on MG



Download:Ideal Coordinates CCD File
H [auth B]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.11.1
RECONSTRUCTIONcisTEM1.0.0

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland150665

Revision History  (Full details and data files)

  • Version 1.0: 2019-05-08
    Type: Initial release
  • Version 1.1: 2019-11-06
    Changes: Data collection, Refinement description
  • Version 1.2: 2024-05-15
    Changes: Data collection, Database references, Derived calculations