6R2V

Arabidopsis NF-Y/CCAAT-box complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.200 
  • R-Value Observed: 0.202 

wwPDB Validation 3D Report Full Report



Literature

Structural features of NF-Y/CCAAT association in plants

Chaves-Sanjuan, A.Gnesutta, N.Chiara, M.Bernardini, A.Horner, D.Nardini, M.Mantovani, R.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Nuclear transcription factor Y subunit A-6A75Arabidopsis thalianaMutation(s): 0 
Gene Names: NFYA6At3g14020MDC16.15
Find proteins for Q9LVJ7 (Arabidopsis thaliana)
Explore Q9LVJ7 
Go to UniProtKB:  Q9LVJ7
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
NF-YB2B97Arabidopsis thalianaMutation(s): 0 
Gene Names: AXX17_At5g46140AN1_LOCUS25001C24_LOCUS24833
Find proteins for A0A178UPH7 (Arabidopsis thaliana)
Explore A0A178UPH7 
Go to UniProtKB:  A0A178UPH7
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  • Reference Sequence
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
NF-YC3C95Arabidopsis thalianaMutation(s): 0 
Gene Names: AXX17_At1g49320AN1_LOCUS4606C24_LOCUS4494
Find proteins for A0A178WGU5 (Arabidopsis thaliana)
Explore A0A178WGU5 
Go to UniProtKB:  A0A178WGU5
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  • Reference Sequence
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Entity ID: 4
MoleculeChainsLengthOrganismImage
FT (-5kb) CCAAT-box 5'I25Arabidopsis thaliana
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Entity ID: 5
MoleculeChainsLengthOrganismImage
FT (-5kb) CCAAT-box 3'J25Arabidopsis thaliana
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.200 
  • R-Value Observed: 0.202 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 53.446α = 90
b = 85.525β = 90
c = 130.305γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
STARANISOdata scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2020-09-30
    Type: Initial release