6QPA

Halothiobacillus neapolitanus sulfur oxygenase reductase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.162 
  • R-Value Observed: 0.162 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Multiple sulfane modifications in active-site cysteine thiols of two sulfur oxygenase reductases and analysis of substrate/product channels

Frazao, C.Klezin, A.Poell, U.Veith, A.Ruehl, P.Coelho, R.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Sulfur oxygenase/reductase
A,
B,
C,
D,
E,
314Halothiobacillus neapolitanus c2Mutation(s): 0 
Gene Names: Hneap_1222
EC: 1.13.11.55
UniProt
Find proteins for D0L035 (Halothiobacillus neapolitanus (strain ATCC 23641 / c2))
Explore D0L035 
Go to UniProtKB:  D0L035
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupD0L035
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4 (Subject of Investigation/LOI)
Query on SO4

Download Ideal Coordinates CCD File 
AA [auth A],
AB [auth I],
BA [auth A],
BB [auth I],
BC [auth R],
AA [auth A],
AB [auth I],
BA [auth A],
BB [auth I],
BC [auth R],
DA [auth B],
DB [auth J],
DC [auth T],
EA [auth B],
EB [auth J],
FC [auth U],
GA [auth C],
GB [auth K],
GC [auth U],
HA [auth C],
HB [auth K],
HC [auth V],
IA [auth C],
JB [auth L],
JC [auth V],
KA [auth D],
KB [auth L],
KC [auth V],
LA [auth D],
MB [auth M],
MC [auth W],
NA [auth E],
NB [auth M],
NC [auth W],
OA [auth E],
PB [auth N],
PC [auth Y],
QA [auth F],
QB [auth N],
RA [auth F],
RC [auth Z],
SA [auth F],
SB [auth O],
TB [auth O],
UA [auth G],
VA [auth G],
VB [auth P],
WB [auth P],
XA [auth H],
YA [auth H],
YB [auth Q],
Z [auth A],
ZB [auth Q]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
FE (Subject of Investigation/LOI)
Query on FE

Download Ideal Coordinates CCD File 
AC [auth R],
CA [auth B],
CB [auth J],
CC [auth T],
EC [auth U],
AC [auth R],
CA [auth B],
CB [auth J],
CC [auth T],
EC [auth U],
FA [auth C],
FB [auth K],
IB [auth L],
IC [auth V],
JA [auth D],
LB [auth M],
LC [auth W],
MA [auth E],
OB [auth N],
OC [auth Y],
PA [auth F],
QC [auth Z],
RB [auth O],
TA [auth G],
UB [auth P],
WA [auth H],
XB [auth Q],
Y [auth A],
ZA [auth I]
FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
CSS
Query on CSS
A,
B,
C,
D,
E,
A,
B,
C,
D,
E,
F,
G,
H,
I,
J,
K,
L,
M,
N,
O,
P,
Q,
R,
S [auth T],
T [auth U],
U [auth V],
V [auth W],
W [auth Y],
X [auth Z]
L-PEPTIDE LINKINGC3 H7 N O2 S2CYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.162 
  • R-Value Observed: 0.162 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 200.84α = 90
b = 212.45β = 90
c = 215.98γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Foundation for Science and Technology (FCT)PortugalLIOA-01-0145-FEDER-007660
German Research Foundation (DFG)GermanyKl885-6/1
German Research Foundation (DFG)GermanyKl885-7/1

Revision History  (Full details and data files)

  • Version 1.0: 2020-03-18
    Type: Initial release