6QLB

Calpain small subunit 1, RNA-binding protein Hfq


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.32 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.203 

wwPDB Validation   3D Report Full Report



Literature

Calpain small subunit 1, RNA-binding protein Hfq

Rizkallah, P.J.Cresser-Brown, J.O.

(null) Acta Crystallogr Sect F Struct Biol Cryst Commun 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Calpain small subunit 1 ABCD173Homo sapiensMutation(s): 0 
Gene Names: CAPNS1CAPN4CAPNS
Find proteins for P04632 (Homo sapiens)
Explore P04632 
Go to UniProtKB:  P04632
NIH Common Fund Data Resources
PHAROS:  P04632
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
RNA-binding protein Hfq EFGH63Escherichia coliMutation(s): 0 
Gene Names: hfqNCTC13125_02619
Find proteins for P0A6X3 (Escherichia coli (strain K12))
Explore P0A6X3 
Go to UniProtKB:  P0A6X3
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
P4G
Query on P4G

Download Ideal Coordinates CCD File 
B, C
1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE
C8 H18 O3
RRQYJINTUHWNHW-UHFFFAOYSA-N
 Ligand Interaction
GUN
Query on GUN

Download Ideal Coordinates CCD File 
A, E, F, H
GUANINE
C5 H5 N5 O
UYTPUPDQBNUYGX-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download Ideal Coordinates CCD File 
A
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

Download Ideal Coordinates CCD File 
A, B, C, D
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.32 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.203 
  • Space Group: P 21 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 147.607α = 90
b = 147.607β = 90
c = 147.607γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
xia2data reduction
Aimlessdata scaling
PHASERphasing
XDSdata reduction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2020-02-05
    Type: Initial release