6QJE

Structure of human galactokinase 1 bound with 4-{[2-(Methylsulfonyl)-1H-imidazol-1-yl]methyl}-1,3-thiazole


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.217 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of human galactokinase 1 bound with 4-{[2-(Methylsulfonyl)-1H-imidazol-1-yl]methyl}-1,3-thiazole

Mackinnon, S.R.Bezerra, G.A.Zhang, M.Foster, W.Krojer, T.Brandao-Neto, J.Douangamath, A.Arrowsmith, C.Edwards, A.Bountra, C.Brennan, P.Lai, K.Yue, W.W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Galactokinase
A, B, C, D
392Homo sapiensMutation(s): 2 
Gene Names: GALK1 (GALK)
EC: 2.7.1.6
Find proteins for P51570 (Homo sapiens)
Go to Gene View: GALK1
Go to UniProtKB:  P51570
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
C
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GAL
Query on GAL

Download SDF File 
Download CCD File 
A, B, C
BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
 Ligand Interaction
HFK
Query on HFK

Download SDF File 
Download CCD File 
A, B, C
2-(1,3-benzoxazol-2-ylamino)spiro[1,6,7,8-tetrahydroquinazoline-4,1'-cyclohexane]-5-one
C20 H22 N4 O2
AZBGHUMVHJKFOO-UHFFFAOYSA-N
 Ligand Interaction
J4Q
Query on J4Q

Download SDF File 
Download CCD File 
A, B, D
4-[(2-methylsulfonylimidazol-1-yl)methyl]-1,3-thiazole
C8 H9 N3 O2 S2
DWPGGNJRLYKHCD-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.217 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 73.703α = 90.00
b = 114.873β = 100.56
c = 121.044γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
PDB_EXTRACTdata extraction
Aimlessdata scaling
XDSdata reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom092809/Z/10/Z

Revision History 

  • Version 1.0: 2019-02-27
    Type: Initial release