6QHE | pdb_00006qhe

Alcohol Dehydrogenase from Arthrobacter sp. TS-15 in complex with NAD+

• PDB DOI: https://doi.org/10.2210/pdb6QHE/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Arthrobacter
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2019-01-16 Released: 2019-11-27 
• Deposition Author(s): Lockie, C., Beloti, L., Shanati, T., Ansorge-Schumacher, M., Grogan, G.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.83 Å
• R-Value Free: 
  0.182 (Depositor), 0.190 (DCC) 
• R-Value Work: 
  0.159 (Depositor), 0.170 (DCC) 
• R-Value Observed: 
  0.161 (Depositor) 

Starting Model: experimental

Literature

Two Enantiocomplementary Ephedrine Dehydrogenases from Arthrobacter sp. TS-15 with Broad Substrate Specificity

Shanati, T., Lockie, C., Beloti, L., Grogan, G., Ansorge-Schumacher, M.

(2019) ACS Catal 9: 6202-6211

• DOI: https://doi.org/10.1021/acscatal.9b00621

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 175.58 kDa 
• Atom Count: 12,361 
• Modeled Residue Count: 1,555 
• Deposited Residue Count: 1,650 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alcohol Dehydrogenase	A, B, C, D, E, F	275	Arthrobacter	Mutation(s): 0  EC: 1.1.1.1

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAD	G [auth A], I [auth B], K [auth C], M [auth D], O [auth F]	NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N
NA	H [auth A], J [auth B], L [auth C], N [auth E]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.83 Å
• R-Value Free:  0.182 (Depositor), 0.190 (DCC) 
• R-Value Work:  0.159 (Depositor), 0.170 (DCC) 
• R-Value Observed: 0.161 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.731	α = 90
b = 119.041	β = 90
c = 348.578	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
SCALA	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2019-11-27 
Deposition Author(s): Lockie, C., Beloti, L., Shanati, T., Ansorge-Schumacher, M., Grogan, G.

Revision History  

• Version 1.0: 2019-11-27
  Type: Initial release
  
• Version 1.1: 2024-01-24
  Changes: Data collection, Database references, Derived calculations, Refinement description