6QHB

Crystal Structure of Human Kallikrein 6 in complex with GSK578724A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.84 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.183 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Kallikrein 5 inhibitors identified through structure based drug design in search for a treatment for Netherton Syndrome.

White, G.V.Edgar, E.V.Holmes, D.S.Lewell, X.Q.Liddle, J.Polyakova, O.Smith, K.J.Thorpe, J.H.Walker, A.L.Wang, Y.Young, R.J.Hovnanian, A.

(2019) Bioorg. Med. Chem. Lett. 29: 821-825


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Kallikrein-6
A, B
223Homo sapiensMutation(s): 3 
Gene Names: KLK6 (PRSS18, PRSS9)
EC: 3.4.21.-
Find proteins for Q92876 (Homo sapiens)
Go to Gene View: KLK6
Go to UniProtKB:  Q92876
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
J2W
Query on J2W

Download SDF File 
Download CCD File 
A, B
~{N}-(4-carbamimidoylphenyl)-3-methoxy-2-oxidanyl-benzamide
C15 H15 N3 O3
FRAFAKWXNNKJCF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.84 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.183 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 57.840α = 90.00
b = 45.950β = 93.54
c = 90.730γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
BUSTERrefinement
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2019-01-16 
  • Released Date: 2019-02-06 
  • Deposition Author(s): Thorpe, J.H.

Revision History 

  • Version 1.0: 2019-02-06
    Type: Initial release
  • Version 1.1: 2019-02-27
    Type: Data collection, Database references