6QGF

Galectin-3C in complex with a pair of enantiomeric ligands: R enantiomer


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.34 Å
  • R-Value Free: 0.158 
  • R-Value Work: 0.124 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Interplay between Conformational Entropy and Solvation Entropy in Protein-Ligand Binding.

Verteramo, M.L.Stenstrom, O.Ignjatovic, M.M.Caldararu, O.Olsson, M.A.Manzoni, F.Leffler, H.Oksanen, E.Logan, D.T.Nilsson, U.J.Ryde, U.Akke, M.

(2019) J. Am. Chem. Soc. 141: 2012-2026


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Galectin-3
A
138Homo sapiensMutation(s): 0 
Gene Names: LGALS3 (MAC2)
Find proteins for P17931 (Homo sapiens)
Go to Gene View: LGALS3
Go to UniProtKB:  P17931
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
J0T
Query on J0T

Download SDF File 
Download CCD File 
A
(2~{S},3~{R},4~{S},5~{R},6~{R})-4-[4-(3-fluorophenyl)-1,2,3-triazol-1-yl]-2-[(2~{R})-3-[4-(3-fluorophenyl)-1,2,3-triazol-1-yl]-2-oxidanyl-propyl]sulfanyl-6-(hydroxymethyl)oxane-3,5-diol
C25 H26 F2 N6 O5 S
QSKQHLBUOMOHKU-LAMOWGQJSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.34 Å
  • R-Value Free: 0.158 
  • R-Value Work: 0.124 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 36.096α = 90.00
b = 58.037β = 90.00
c = 62.420γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
XDSdata reduction
PHENIXrefinement
Aimlessdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Knut and Alice Wallenberg FoundationSwedenKAW 2013.022

Revision History 

  • Version 1.0: 2019-01-23
    Type: Initial release
  • Version 1.1: 2019-02-13
    Type: Data collection, Database references