6QFD

The complex structure of hsRosR-S4 (vng0258/RosR-S4)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.133 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.210 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Specificity of protein-DNA interactions in hypersaline environment: Structural studies on complexes of Halobacterium salinarum oxidative stress dependent protein hsRosR

Kutnowski, N.Shmulevich, F.Davidov, G.Shahar, A.Bar-zvi, D.Eichler, J.Zarivach, R.Shaanan, B.

(2019) Nucleic Acids Res. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DNA-binding protein
A, B, C, D
116Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)Mutation(s): 0 
Find proteins for Q9HSF4 (Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1))
Go to UniProtKB:  Q9HSF4
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (28-MER)E,G28Halobacterium salinarum NRC-1
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (28-MER)F,H28Halobacterium salinarum NRC-1
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MN
Query on MN

Download SDF File 
Download CCD File 
A, B, C, D
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.133 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.210 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 46.805α = 81.53
b = 83.995β = 86.18
c = 88.876γ = 74.48
Software Package:
Software NamePurpose
STARANISOdata scaling
PHASERphasing
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Israel Science FoundationIsrael1382/13

Revision History 

  • Version 1.0: 2019-07-10
    Type: Initial release