6QEC

DNA binding domain of LUX ARRYTHMO in complex with DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.192 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

DNA binding domain of LUX ARRYTHMO in complex with DNA

Zubieta, C.Nayak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Transcription factor LUX
A
65Arabidopsis thalianaMutation(s): 0 
Gene Names: LUX (PCL1)
Find proteins for Q9SNB4 (Arabidopsis thaliana)
Go to UniProtKB:  Q9SNB4
Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(*AP*TP*TP*CP*GP*AP*AP*TP*AP*T*TP*AP*TP*AP*TP*TP*CP*GP*AP*A)-3')U10Arabidopsis thaliana
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(*AP*TP*TP*CP*GP*AP*AP*TP*AP*T*TP*AP*TP*AP*TP*TP*CP*GP*AP*A)-3')B10Arabidopsis thaliana
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.192 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 32.758α = 90.00
b = 51.795β = 110.55
c = 35.993γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
PDB_EXTRACTdata extraction
PHASERphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2019-01-07 
  • Released Date: 2020-02-05 
  • Deposition Author(s): Zubieta, C., Nayak, A.

Funding OrganizationLocationGrant Number
FranceATIP-Avenir

Revision History 

  • Version 1.0: 2020-02-05
    Type: Initial release