6QB7 | pdb_00006qb7

Structure of the H1 domain of human KCTD16

PDB DOI: https://doi.org/10.2210/pdb6QB7/pdb

Classification: SIGNALING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2018-12-20 Released: 2019-02-06
Deposition Author(s): Pinkas, D.M., Bufton, J.C., Williams, E.P., Strain-Damerell, C., Kupinska, K., Burgess-Brown, N.A., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Bullock, A.N., Structural Genomics Consortium (SGC)
Funding Organization(s): European Commission

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.23 Å
R-Value Free:
0.275 (Depositor), 0.280 (DCC)
R-Value Work:
0.230 (Depositor), 0.235 (DCC)
R-Value Observed:
0.232 (Depositor)

Starting Model: other
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure of the H1 domain of human KCTD16

Pinkas, D.M.

To be published.

Macromolecule Content

Total Structure Weight: 95.32 kDa
Atom Count: 4,838
Modeled Residue Count: 565
Deposited Residue Count: 815
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
BTB/POZ domain-containing protein KCTD16	A, B, C, D, E	163	Homo sapiens	Mutation(s): 0 Gene Names: KCTD16, KIAA1317
UniProt & NIH Common Fund Data Resources
Find proteins for Q68DU8 (Homo sapiens) Explore Q68DU8 Go to UniProtKB: Q68DU8
PHAROS: Q68DU8 GTEx: ENSG00000183775
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q68DU8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PO4 Query on PO4 Download:Ideal Coordinates CCD File SDF format, chain I [auth B] SDF format, chain L [auth C] SDF format, chain P [auth E] SDF format, chain Q [auth E] SDF format, chain S [auth E] SDF format, chain T [auth E] SDF format, chain R [auth E] SDF format, chain O [auth D] SDF format, chain N [auth D] SDF format, chain M [auth D] SDF format, chain K [auth C] SDF format, chain J [auth C] SDF format, chain H [auth B] SDF format, chain G [auth A] SDF format, chain F [auth A] MOL2 format, chain I [auth B] MOL2 format, chain L [auth C] MOL2 format, chain P [auth E] MOL2 format, chain Q [auth E] MOL2 format, chain S [auth E] MOL2 format, chain T [auth E] MOL2 format, chain R [auth E] MOL2 format, chain O [auth D] MOL2 format, chain N [auth D] MOL2 format, chain M [auth D] MOL2 format, chain K [auth C] MOL2 format, chain J [auth C] MOL2 format, chain H [auth B] MOL2 format, chain G [auth A] MOL2 format, chain F [auth A] mmCIF format, chain I [auth B] mmCIF format, chain L [auth C] mmCIF format, chain P [auth E] mmCIF format, chain Q [auth E] mmCIF format, chain S [auth E] mmCIF format, chain T [auth E] mmCIF format, chain R [auth E] mmCIF format, chain O [auth D] mmCIF format, chain N [auth D] mmCIF format, chain M [auth D] mmCIF format, chain K [auth C] mmCIF format, chain J [auth C] mmCIF format, chain H [auth B] mmCIF format, chain G [auth A] mmCIF format, chain F [auth A]	F [auth A] G [auth A] H [auth B] I [auth B] J [auth C] F [auth A], G [auth A], H [auth B], I [auth B], J [auth C], K [auth C], L [auth C], M [auth D], N [auth D], O [auth D], P [auth E], Q [auth E], R [auth E], S [auth E], T [auth E]	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Interactions Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth B] Focus chain I [auth B] Focus chain J [auth C] Focus chain K [auth C] Focus chain L [auth C] Focus chain M [auth D] Focus chain N [auth D] Focus chain O [auth D] Focus chain P [auth E] Focus chain Q [auth E] Focus chain R [auth E] Focus chain S [auth E] Focus chain T [auth E] Interactions & Density Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth B] Focus chain I [auth B] Focus chain J [auth C] Focus chain K [auth C] Focus chain L [auth C] Focus chain M [auth D] Focus chain N [auth D] Focus chain O [auth D] Focus chain P [auth E] Focus chain Q [auth E] Focus chain R [auth E] Focus chain S [auth E] Focus chain T [auth E]