6Q99 | pdb_00006q99

Ande virus L protein N-terminus mutant K124A

• PDB DOI: https://doi.org/10.2210/pdb6Q99/pdb
• Entry: 6Q99 supersedes: 5HSB

• Classification: VIRAL PROTEIN
• Organism(s): Orthohantavirus andesense
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2018-12-17 Released: 2020-01-15 
• Deposition Author(s): Fernandez-Garcia, Y., Holm, T., Kirchmair, J., Wurr, S., Gunther, S., Reindl, S.
• Funding Organization(s): German Federal Ministry for Education and Research, German Research Foundation

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.95 Å
• R-Value Free: 
  0.313 (Depositor), 0.320 (DCC) 
• R-Value Work: 
  0.238 (Depositor), 0.240 (DCC) 
• R-Value Observed: 
  0.246 (Depositor) 

Starting Model: experimental

Literature

Specific inhibition of a diverse set of segmented negative strand viruses by a single molecule

Fernandez-Garcia, Y., Kirchmair, J., Holm, T., Wurr, S., Gunther, S., Reindl, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: SAXS

Macromolecule Content 

• Total Structure Weight: 23.3 kDa 
• Atom Count: 1,625 
• Modeled Residue Count: 201 
• Deposited Residue Count: 202 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA polymerase	A	202	Orthohantavirus andesense	Mutation(s): 1  EC: 3.1 (UniProt), 2.7.7.48 (UniProt)
UniProt
Find proteins for Q9E005 (Andes orthohantavirus) Explore Q9E005  Go to UniProtKB:  Q9E005

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	D [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
MN3 (Subject of Investigation/LOI)	B [auth A], C [auth A]	MANGANESE (III) ION Mn MMIPFLVOWGHZQD-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.95 Å
• R-Value Free:  0.313 (Depositor), 0.320 (DCC) 
• R-Value Work:  0.238 (Depositor), 0.240 (DCC) 
• R-Value Observed: 0.246 (Depositor) 

Space Group: P 4 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 82.341	α = 90
b = 82.341	β = 90
c = 79.599	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
MOSFLM	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2020-01-15 
Deposition Author(s): Fernandez-Garcia, Y., Holm, T., Kirchmair, J., Wurr, S., Gunther, S., Reindl, S.
• This entry supersedes: 5HSB

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Funding Organization	Location	Grant Number
German Federal Ministry for Education and Research	Germany	IB-045
German Research Foundation	Germany	RE 3712/1-1

Revision History  

• Version 1.0: 2020-01-15
  Type: Initial release
  
• Version 1.1: 2024-01-24
  Changes: Data collection, Database references, Derived calculations, Refinement description