6Q90

Structure of human galactokinase 1 bound with 1-(4-Methoxyphenyl)-3-(4-pyridinyl)urea


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.277 
  • R-Value Work: 0.220 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of human galactokinase 1 bound with 1-(4-Methoxyphenyl)-3-(4-pyridinyl)urea

Mackinnon, S.R.Bezerra, G.A.Zhang, M.Foster, W.Krojer, T.Brandao-Neto, J.Douangamath, A.Arrowsmith, C.Edwards, A.Bountra, C.Brennan, P.Lai, K.Yue, W.W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Galactokinase
A, B, C, D
392Homo sapiensMutation(s): 2 
Gene Names: GALK1 (GALK)
EC: 2.7.1.6
Find proteins for P51570 (Homo sapiens)
Go to Gene View: GALK1
Go to UniProtKB:  P51570
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GAL
Query on GAL

Download SDF File 
Download CCD File 
A, B, C
BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
 Ligand Interaction
HFK
Query on HFK

Download SDF File 
Download CCD File 
A, B, C
2-(1,3-benzoxazol-2-ylamino)spiro[1,6,7,8-tetrahydroquinazoline-4,1'-cyclohexane]-5-one
C20 H22 N4 O2
AZBGHUMVHJKFOO-UHFFFAOYSA-N
 Ligand Interaction
JHJ
Query on JHJ

Download SDF File 
Download CCD File 
C, D
N-(4-methoxyphenyl)-N'-pyridin-4-ylurea
C13 H13 N3 O2
IFKGCTGEAFOLOL-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.277 
  • R-Value Work: 0.220 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 73.550α = 90.00
b = 114.510β = 100.33
c = 120.810γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
REFMACrefinement
Aimlessdata scaling
REFMACphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom092809/Z/10/Z

Revision History 

  • Version 1.0: 2019-01-23
    Type: Initial release