6Q78 | pdb_00006q78

The structure of GH26C from Muricauda sp. MAR_2010_75

PDB DOI: https://doi.org/10.2210/pdb6Q78/pdb

Classification: HYDROLASE
Organism(s): Allomuricauda sp. MAR_2010_75
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2018-12-13 Released: 2020-01-15
Deposition Author(s): Robb, C.S., Hehemann, J.H.
Funding Organization(s): German Research Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free:
0.191 (Depositor), 0.192 (DCC)
R-Value Work:
0.164 (Depositor), 0.166 (DCC)
R-Value Observed:
0.165 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 6Q78

This is version 1.1 of the entry. See complete history.

Literature

The structure of GH26C from Muricauda sp. MAR_2010_75

Robb, C.S., Hehemann, J.H.

To be published.

Macromolecule Content

Total Structure Weight: 95.86 kDa
Atom Count: 6,897
Modeled Residue Count: 748
Deposited Residue Count: 836
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GH26C	A, B	418	Allomuricauda sp. MAR_2010_75	Mutation(s): 0 EC: 3.2.1.78
UniProt
Find proteins for A0ACD6BAS2 (Allomuricauda sp. MAR_2010_75) Explore A0ACD6BAS2 Go to UniProtKB: A0ACD6BAS2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0ACD6BAS2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
TRS Query on TRS Download:Ideal Coordinates CCD File SDF format, chain D [auth B] SDF format, chain C [auth A] MOL2 format, chain D [auth B] MOL2 format, chain C [auth A] mmCIF format, chain D [auth B] mmCIF format, chain C [auth A]	C [auth A], D [auth B]	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C₄ H₁₂ N O₃ LENZDBCJOHFCAS-UHFFFAOYSA-O		Interactions Focus chain C [auth A] Focus chain D [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.191 (Depositor), 0.192 (DCC)
R-Value Work: 0.164 (Depositor), 0.166 (DCC)
R-Value Observed: 0.165 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 94.119	α = 90
b = 60.358	β = 95.92
c = 148.995	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2020-01-15

Deposition Author(s):

Funding Organization	Location	Grant Number
German Research Foundation	Germany	HE 7217/1-1

Revision History (Full details and data files)

Version 1.0: 2020-01-15
Type: Initial release
Version 1.1: 2024-01-24
Changes: Advisory, Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.