6PMT

Structure of Mortalin-NBD with adenosine-5'-monophosphate and thiodiphosphate

  • Classification: CHAPERONE
  • Organism(s): Homo sapiens
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2019-07-02 Released: 2020-07-08 
  • Deposition Author(s): Moseng, M.A., Nix, J.C., Page, R.C.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Science Foundation (NSF, United States)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.191 
  • R-Value Observed: 0.192 

wwPDB Validation   3D Report Full Report



Literature

Structure of the mortalin nucleotide binding domain in complex with adenosine monophosphate

Moseng, M.A.Nix, J.C.Page, R.C.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Stress-70 protein, mitochondrial A385Homo sapiensMutation(s): 0 
Gene Names: HSPA9GRP75HSPA9Bmt-HSP70
Find proteins for P38646 (Homo sapiens)
Explore P38646 
Go to UniProtKB:  P38646
NIH Common Fund Data Resources
PHAROS:  P38646
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
AMP
Query on AMP

Download Ideal Coordinates CCD File 
A
ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
 Ligand Interaction
PIS
Query on PIS

Download Ideal Coordinates CCD File 
A
TRIHYDROGEN THIODIPHOSPHATE
H3 O6 P2 S
HWTUHTNZLQJJEV-UHFFFAOYSA-M
 Ligand Interaction
PO4
Query on PO4

Download Ideal Coordinates CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.191 
  • R-Value Observed: 0.192 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 52.829α = 90
b = 56.548β = 90
c = 141.363γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM128595
National Science Foundation (NSF, United States)United StatesMCB 15-52113

Revision History 

  • Version 1.0: 2020-07-08
    Type: Initial release