6PL1

TRK-A IN COMPLEX WITH LIGAND 1B


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.217 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Lead Identification and Characterization of hTrkA Type 2 Inhibitors

Subramanian, G.Zhu, Y.Bowen, S.j.Roush, N.White, J.A.Huczek, D.Zachary, T.Javens, C.Williams, T.Janssen, A.Gonzales, A.

(2019) Bioorg.Med.Chem.Lett. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
High affinity nerve growth factor receptor
A
311Homo sapiensMutation(s): 0 
Gene Names: NTRK1 (MTC, TRK, TRKA)
EC: 2.7.10.1
Find proteins for P04629 (Homo sapiens)
Go to Gene View: NTRK1
Go to UniProtKB:  P04629
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
OOJ
Query on OOJ

Download SDF File 
Download CCD File 
A
N-(5-{[(7-methyl-4-oxo-4H-pyrido[1,2-a]pyrimidin-2-yl)methyl]sulfanyl}-1,3,4-thiadiazol-2-yl)-N'-[3-(trifluoromethyl)phenyl]urea
C20 H15 F3 N6 O2 S2
OQDBRNRNKHKMSL-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
SEP
Query on SEP
A
L-PEPTIDE LINKINGC3 H8 N O6 PSER
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.217 
  • Space Group: P 31 1 2
Unit Cell:
Length (Å)Angle (°)
a = 51.915α = 90.00
b = 51.915β = 90.00
c = 229.322γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
XSCALEdata scaling
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2019-06-30 
  • Released Date: 2019-10-09 
  • Deposition Author(s): Subramanian, G.

Revision History 

  • Version 1.0: 2019-10-09
    Type: Initial release