6PI9

Crystal structure of 16S rRNA methylase RmtF in complex with S-Adenosyl-L-homocysteine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.192 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of 16S rRNA methylase RmtF in complex with S-Adenosyl-L-homocysteine

Stogios, P.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
16S rRNA (guanine(1405)-N(7))-methyltransferase
A
260Klebsiella pneumoniaeMutation(s): 0 
Gene Names: rmtF
EC: 2.1.1.179
Find proteins for I1YZZ5 (Klebsiella pneumoniae)
Go to UniProtKB:  I1YZZ5
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SAH
Query on SAH

Download SDF File 
Download CCD File 
A
S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.192 
  • Space Group: P 41 2 2
Unit Cell:
Length (Å)Angle (°)
a = 77.637α = 90.00
b = 77.637β = 90.00
c = 96.926γ = 90.00
Software Package:
Software NamePurpose
PHENIXmodel building
Cootmodel building
HKL-3000data scaling
PHENIXphasing
PHENIXrefinement
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesCanadaHHSN272201700060C

Revision History 

  • Version 1.0: 2019-07-10
    Type: Initial release