6PGV

Human Josephin-2 in complex with ubiquitin

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.201 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history. 

Literature

Structural insights into the activity and regulation of human Josephin-2

Grasty, K.C., Weeks, S.D., Loll, P.J.

(2019) J.Struct.Biol. 3: 100011


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Josephin-2
A
188Homo sapiensMutation(s): 0 
Gene Names: JOSD2
EC: 3.4.19.12
Find proteins for Q8TAC2 (Homo sapiens)
Go to Gene View: JOSD2
Go to UniProtKB:  Q8TAC2
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Polyubiquitin-B
B
75Homo sapiensMutation(s): 0 
Gene Names: UBB
Find proteins for P0CG47 (Homo sapiens)
Go to Gene View: UBB
Go to UniProtKB:  P0CG47
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NEH
Query on NEH
Download SDF File 
Download CCD File 
B
ETHANAMINE
C2 H7 N
QUSNBJAOOMFDIB-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.201 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 102.120α = 90.00
b = 102.120β = 90.00
c = 92.200γ = 120.00
Software Package:
Software NamePurpose
XSCALEdata scaling
PHENIXphasing
XDSdata reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots


View more in-depth experimental data

Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Neurological Disorders and StrokeUnited StatesR01NS065140

Revision History 

  • Version 1.0: 2019-10-23
    Type: Initial release