6PB4 | pdb_00006pb4

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

(2020) PLoS Biol 18: e3000706

Macromolecule Content

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerase subunit alpha	A, B	329	Escherichia coli	Mutation(s): 0 Gene Names: rpoA, Z4665, ECs4160 EC: 2.7.7.6
UniProt
Find proteins for P0A7Z4 (Escherichia coli (strain K12)) Explore P0A7Z4 Go to UniProtKB: P0A7Z4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0A7Z4
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Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerase subunit beta	C	1,342	Escherichia coli	Mutation(s): 0 Gene Names: rpoB, ECS88_4448 EC: 2.7.7.6
UniProt
Find proteins for P0A8V2 (Escherichia coli (strain K12)) Explore P0A8V2 Go to UniProtKB: P0A8V2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0A8V2
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Reference Sequence

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerase subunit beta'	D	1,407	Escherichia coli	Mutation(s): 0 Gene Names: rpoC, Z5561, ECs4911 EC: 2.7.7.6
UniProt
Find proteins for P0A8T7 (Escherichia coli (strain K12)) Explore P0A8T7 Go to UniProtKB: P0A8T7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0A8T7
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Reference Sequence

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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerase subunit omega	E	91	Escherichia coli	Mutation(s): 0 Gene Names: rpoZ, ECS88_4064 EC: 2.7.7.6
UniProt
Find proteins for P0A800 (Escherichia coli (strain K12)) Explore P0A800 Go to UniProtKB: P0A800
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0A800
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Reference Sequence

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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA polymerase sigma factor RpoD	F	628	Escherichia coli	Mutation(s): 0 Gene Names: rpoD, alt, b3067, JW3039
UniProt
Find proteins for P00579 (Escherichia coli (strain K12)) Explore P00579 Go to UniProtKB: P00579
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P00579
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Reference Sequence

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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
cAMP-activated global transcriptional regulator CRP	G, H	210	Escherichia coli	Mutation(s): 0 Gene Names: crp, Z4718, ECs4208
UniProt
Find proteins for P0ACJ8 (Escherichia coli (strain K12)) Explore P0ACJ8 Go to UniProtKB: P0ACJ8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0ACJ8
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Reference Sequence

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Molecule	Chains	Length	Organism
Entity ID: 7
SYNTHETIC NONTEMPLATE STRAND DNA (78-MER)	I [auth 1]	78	Escherichia coli
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Reference Sequence

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Molecule	Chains	Length	Organism
Entity ID: 8
SYNTHETIC TEMPLATE STRAND DNA (78-MER)	J [auth 2]	78	Escherichia coli
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Reference Sequence

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Molecule	Chains	Length	Organism
Entity ID: 9
Nascent RNA	K [auth 3]	3	Escherichia coli
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Reference Sequence

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CMP (Subject of Investigation/LOI) Query on CMP Download:Ideal Coordinates CCD File SDF format, chain P [auth H] SDF format, chain O [auth G] MOL2 format, chain P [auth H] MOL2 format, chain O [auth G] mmCIF format, chain P [auth H] mmCIF format, chain O [auth G]	O [auth G], P [auth H]	ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE C₁₀ H₁₂ N₅ O₆ P IVOMOUWHDPKRLL-KQYNXXCUSA-N		Interactions Focus chain O [auth G] Focus chain P [auth H] Interactions & Density Focus chain O [auth G] Focus chain P [auth H]
ZN (Subject of Investigation/LOI) Query on ZN Download:Ideal Coordinates CCD File SDF format, chain M [auth D] SDF format, chain L [auth D] MOL2 format, chain M [auth D] MOL2 format, chain L [auth D] mmCIF format, chain M [auth D] mmCIF format, chain L [auth D]	L [auth D], M [auth D]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain L [auth D] Focus chain M [auth D] Interactions & Density Focus chain L [auth D] Focus chain M [auth D]
MG (Subject of Investigation/LOI) Query on MG Download:Ideal Coordinates CCD File SDF format, chain N [auth D] MOL2 format, chain N [auth D] mmCIF format, chain N [auth D]	N [auth D]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain N [auth D] Interactions & Density Focus chain N [auth D]