Glycosylation Associate Protein (Gap123) complex from Streptococcus agalactiae
zhang, H., Zhu, F., Wu, H.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Glycosylation Associate Protein 1 | 514 | Streptococcus agalactiae 2603V/R | Mutation(s): 0  Gene Names: SAG1452 | ||
UniProt | |||||
Find proteins for Q8DYM4 (Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R)) Explore Q8DYM4  Go to UniProtKB:  Q8DYM4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8DYM4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Glycosylation Associate Protein 2 | 519 | Streptococcus agalactiae 2603V/R | Mutation(s): 0  Gene Names: SAG1451 | ||
UniProt | |||||
Find proteins for Q8DYM5 (Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R)) Explore Q8DYM5  Go to UniProtKB:  Q8DYM5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8DYM5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Glycosylation Associate Protein 3 | 330 | Streptococcus agalactiae 2603V/R | Mutation(s): 0  Gene Names: SAG1450 | ||
UniProt | |||||
Find proteins for Q8DYM6 (Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R)) Explore Q8DYM6  Go to UniProtKB:  Q8DYM6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8DYM6 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | J [auth A], K [auth A], P [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | D [auth A] E [auth A] F [auth A] G [auth A] H [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 103.009 | α = 90 |
b = 168.321 | β = 90 |
c = 100.034 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
PHENIX | phasing |
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Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of Dental and Craniofacial Research (NIH/NIDCR) | United States | 5R01DE017954-12 |