6OV1 | pdb_00006ov1

Structure of Staphylococcus aureus RNase P protein mutant with defective mRNA degradation activity

PDB DOI: https://doi.org/10.2210/pdb6OV1/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Staphylococcus aureus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2019-05-06 Released: 2020-12-02
Deposition Author(s): Ha, L., Colquhoun, J., Noinaj, N., Das, C., Dunman, P., Flaherty, D.P.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.66 Å
R-Value Free:
0.238 (Depositor), 0.245 (DCC)
R-Value Work:
0.187 (Depositor), 0.198 (DCC)
R-Value Observed:
0.191 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Genetic and biochemical characterization of Staphylococcus aureus RnpA

Colquhoun, J.M., Ha, L., Noinaj, N., Das, C., Flaherty, D.P., Dunman, P.M.

To be published.

Macromolecule Content

Total Structure Weight: 31.81 kDa
Atom Count: 2,024
Modeled Residue Count: 241
Deposited Residue Count: 274
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribonuclease P protein component	A, B	137	Staphylococcus aureus	Mutation(s): 1 Gene Names: rnpA EC: 3.1.26.5
UniProt
Find proteins for P0A0H5 (Staphylococcus aureus) Explore P0A0H5 Go to UniProtKB: P0A0H5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0A0H5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.66 Å
R-Value Free: 0.238 (Depositor), 0.245 (DCC)
R-Value Work: 0.187 (Depositor), 0.198 (DCC)
R-Value Observed: 0.191 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 40.386	α = 91.11
b = 43.467	β = 114.83
c = 45.837	γ = 110.95

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data scaling
PDB_EXTRACT	data extraction
HKL-2000	data reduction
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2020-12-02

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	R01AI13468502

Revision History (Full details and data files)

Version 1.0: 2020-12-02
Type: Initial release
Version 1.1: 2023-10-11
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.