Download MendeleyCrystal Structure of the D-alanyl-D-alanine carboxypeptidase DacD from Francisella tularensis
Kim, Y., Stogios, P., Skarina, T., Di, R., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)To be published.
6OSU
Crystal Structure of the D-alanyl-D-alanine carboxypeptidase DacD from Francisella tularensis
- DOI: 10.2210/pdb6OSU/pdb
- Classification: HYDROLASE
- Organism(s): Francisella tularensis subsp. tularensis SCHU S4
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2019-05-02 Released: 2019-05-15
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.44 Å
- R-Value Free: 0.229
- R-Value Work: 0.182
- R-Value Observed: 0.185
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein) family protein | A | 427 | Francisella tularensis subsp. tularensis SCHU S4 | Mutation(s): 0 Gene Names: dacD, FTT_1029, BZ14_1819 EC: 3.4.16.4 |  |
Find proteins for Q5NG28 (Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)) Explore Q5NG28 Go to UniProtKB: Q5NG28 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | A | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| CL Query on CL | A | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.44 Å
- R-Value Free: 0.229
- R-Value Work: 0.182
- R-Value Observed: 0.185
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 40.78 | α = 90 |
| b = 131.57 | β = 107.36 |
| c = 46.06 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| SBC-Collect | data collection |
| DIALS | data reduction |
| xia2 | data reduction |
| Aimless | data scaling |
| HKL-3000 | phasing |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2019-05-02
- Released Date: 2019-05-15 Deposition Author(s): Kim, Y., Stogios, P., Skarina, T., Di, R., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | -- |
