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Download EndnoteCrystal Structure of the D-alanyl-D-alanine carboxypeptidase DacD from Francisella tularensis
Kim, Y., Stogios, P., Skarina, T., Di, R., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)To be published.
6OSU
Crystal Structure of the D-alanyl-D-alanine carboxypeptidase DacD from Francisella tularensis
- DOI: 10.2210/pdb6OSU/pdb
- Classification: HYDROLASE
- Organism(s): Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)
- Expression System: Escherichia coli BL21(DE3)
- Deposited: 2019-05-02 Released: 2019-05-15
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.44 Å
- R-Value Free: 0.229
- R-Value Work: 0.182
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein) family protein | A | 427 | Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4) | Mutation(s): 0 Gene Names: dacD EC: 3.4.16.4 |
Find proteins for Q5NG28 (Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)) Go to UniProtKB: Q5NG28 | ||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | A | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| EDO Query on EDO | A | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.44 Å
- R-Value Free: 0.229
- R-Value Work: 0.182
- Space Group: P 1 21 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 40.780 | α = 90.00 |
| b = 131.570 | β = 107.36 |
| c = 46.060 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | phasing |
| Aimless | data scaling |
| SBC-Collect | data collection |
| MOLREP | phasing |
| xia2 | data reduction |
| PHENIX | refinement |
| DIALS | data reduction |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2019-05-02
- Released Date: 2019-05-15
- Deposition Author(s): Kim, Y., Stogios, P., Skarina, T., Di, R., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases | United States | -- |
Revision History
- Version 1.0: 2019-05-15
Type: Initial release
