6OSU

Crystal Structure of the D-alanyl-D-alanine carboxypeptidase DacD from Francisella tularensis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.182 
  • R-Value Observed: 0.185 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal Structure of the D-alanyl-D-alanine carboxypeptidase DacD from Francisella tularensis

Kim, Y.Stogios, P.Skarina, T.Di, R.Joachimiak, A.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein) family proteinA427Francisella tularensis subsp. tularensis SCHU S4Mutation(s): 0 
Gene Names: dacDFTT_1029BZ14_1819
EC: 3.4.16.4
Find proteins for Q5NG28 (Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4))
Explore Q5NG28 
Go to UniProtKB:  Q5NG28
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download CCD File 
A
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.182 
  • R-Value Observed: 0.185 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 40.78α = 90
b = 131.57β = 107.36
c = 46.06γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
SBC-Collectdata collection
DIALSdata reduction
xia2data reduction
Aimlessdata scaling
HKL-3000phasing
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United States--

Revision History 

  • Version 1.0: 2019-05-15
    Type: Initial release
  • Version 1.1: 2019-12-18
    Changes: Author supporting evidence