6OR9 | pdb_00006or9

Structure of L-lactate dehydrogenase from Trichoplusia ni

PDB DOI: https://doi.org/10.2210/pdb6OR9/pdb

Classification: OXIDOREDUCTASE
Organism(s): Trichoplusia ni
Expression System: Trichoplusia ni
Mutation(s): No

Deposited: 2019-04-29 Released: 2019-07-24
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free:
0.195 (Depositor), 0.200 (DCC)
R-Value Work:
0.158 (Depositor), 0.160 (DCC)
R-Value Observed:
0.159 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure of L-lactate dehydrogenase from Trichoplusia ni

Abendroth, J., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.

To be published.

Macromolecule Content

Total Structure Weight: 158.95 kDa
Atom Count: 10,401
Modeled Residue Count: 1,218
Deposited Residue Count: 1,456
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
L-lactate dehydrogenase	A, B, C, D	364	Trichoplusia ni	Mutation(s): 0 Gene Names: XP_026745590 EC: 1.1.1.27
UniProt
Find proteins for A0A5H1ZR53 (Trichoplusia ni) Explore A0A5H1ZR53 Go to UniProtKB: A0A5H1ZR53
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A5H1ZR53
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.195 (Depositor), 0.200 (DCC)
R-Value Work: 0.158 (Depositor), 0.160 (DCC)
R-Value Observed: 0.159 (Depositor)

Diffraction Data: https://doi.org/10.18430/m36or9

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.39	α = 113.06
b = 76.48	β = 109.84
c = 79.52	γ = 88.7

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PDB_EXTRACT	data extraction
PHASER	phasing
PARROT	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2019-07-24

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2019-07-24
Type: Initial release
Version 1.1: 2024-03-13
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.