6OOL
Structural elucidation of the Ectodomain of mouse UNC5H2
- PDB DOI: https://doi.org/10.2210/pdb6OOL/pdb
- Classification: PROTEIN BINDING
- Organism(s): Mus musculus
- Expression System: Homo sapiens
- Mutation(s): No 
- Deposited: 2019-04-23 Released: 2020-04-29 
- Funding Organization(s): Canadian Institutes of Health Research (CIHR)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.267 
- R-Value Work: 0.220 
- R-Value Observed: 0.222 
wwPDB Validation   3D Report Full Report
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This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Netrin receptor UNC5B | 350 | Mus musculus | Mutation(s): 0  Gene Names: Unc5b, Unc5h2 | ||
UniProt | |||||
Find proteins for Q8K1S3 (Mus musculus) Explore Q8K1S3  Go to UniProtKB:  Q8K1S3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8K1S3 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MAN Query on MAN | C [auth A], D [auth A] | alpha-D-mannopyranose C6 H12 O6 WQZGKKKJIJFFOK-PQMKYFCFSA-N | |||
CL Query on CL | E [auth A] F [auth A] G [auth A] H [auth A] I [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.267 
- R-Value Work: 0.220 
- R-Value Observed: 0.222 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 56.051 | α = 90 |
b = 76.89 | β = 90 |
c = 159.01 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
SCALA | data scaling |
PDB_EXTRACT | data extraction |
MOSFLM | data reduction |
MOLREP | phasing |
Structure Validation
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Entry History & Funding Information
Deposition Data
- Released Date: 2020-04-29  Deposition Author(s): Stetefeld, J., McDougall, M.D., Loewen, P.C., Moya, A., Meier, M.
Funding Organization | Location | Grant Number |
---|---|---|
Canadian Institutes of Health Research (CIHR) | Canada | PJT-152935 |
Revision History (Full details and data files)
- Version 1.0: 2020-04-29
Type: Initial release - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-10-11
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary