6OJM | pdb_00006ojm

Crystal structure of 1,4-dihydroxy-2-naphthoyl-CoA synthase Elizabethkingia anophelis NUHP1

• PDB DOI: https://doi.org/10.2210/pdb6OJM/pdb

• Classification: LYASE
• Organism(s): Elizabethkingia anophelis NUHP1
• Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
• Mutation(s): No 


• Deposited: 2019-04-11 Released: 2019-05-08 
• Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free: 
  0.175 (Depositor) 
• R-Value Work: 
  0.145 (Depositor) 
• R-Value Observed: 
  0.145 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of 1,4-dihydroxy-2-naphthoyl-CoA synthase Elizabethkingia anophelis NUHP1

Abendroth, J., Dranow, D.M., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D3  (Explore in 3D)
Global Stoichiometry: Homo 6-mer - A6 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Dihedral - D3  (Explore in 3D)
Global Stoichiometry: Homo 6-mer - A6 

Biological assembly 2 assigned by authors and generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Dihedral - D3  (Explore in 3D)
Global Stoichiometry: Homo 6-mer - A6 

Biological assembly 3 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 192.5 kDa 
• Atom Count: 14,286 
• Modeled Residue Count: 1,616 
• Deposited Residue Count: 1,716 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
1,4-dihydroxy-2-naphthoyl-CoA synthase	A, B, C, D, E, F	286	Elizabethkingia anophelis NUHP1	Mutation(s): 0  Gene Names: menB, BD94_2634 EC: 4.1.3.36
UniProt
Find proteins for A0A077EJG6 (Elizabethkingia anophelis NUHP1) Explore A0A077EJG6  Go to UniProtKB:  A0A077EJG6

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free:  0.175 (Depositor) 
• R-Value Work:  0.145 (Depositor) 
• R-Value Observed: 0.145 (Depositor) 

Diffraction Data: https://doi.org/10.18430/m36ojm

Space Group: P 3 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 138.49	α = 90
b = 138.49	β = 90
c = 141.43	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PDB_EXTRACT	data extraction
MoRDa	phasing
PHASER	phasing
ARP/wARP	model building
Coot	model building

Structure Validation

Currently 6OJM does not have a validation slider image.

Entry History 

Deposition Data

• Released Date: 2019-05-08 
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History  

• Version 1.0: 2019-05-08
  Type: Initial release
  
• Version 1.1: 2023-10-11
  Changes: Data collection, Database references, Refinement description