6OHE

Alpha-L-fucosidase AlfC D200A in complex with Fuca(1,6)GlcNAc


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.14 Å
  • R-Value Free: 0.299 
  • R-Value Work: 0.279 
  • R-Value Observed: 0.280 

wwPDB Validation 3D Report Full Report



Literature

Molecular basis for highly efficient fucosyltransferase mutants by alpha(1,6)-specific fucosidase AlfC

Klontz, E.H.Sundberg, E.J.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
AlfCA, B, C, D345Lactobacillus caseiMutation(s): 1 
Find proteins for K0NB39 (Lactobacillus casei W56)
Explore K0NB39 
Go to UniProtKB:  K0NB39
Protein Feature View
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  • Reference Sequence
Oligosaccharides

Help

Entity ID: 2
MoleculeChainsChain Length2D Diagram Glycosylation
alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose
E, F, G, H
2 N/A
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.14 Å
  • R-Value Free: 0.299 
  • R-Value Work: 0.279 
  • R-Value Observed: 0.280 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 89.022α = 90
b = 139.251β = 90
c = 263.375γ = 90
Software Package:
Software NamePurpose
XDSdata reduction
Aimlessdata scaling
MOLREPphasing
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2020-04-08
    Type: Initial release
  • Version 2.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Atomic model, Data collection, Derived calculations, Structure summary