6O91

Horse liver L57F alcohol dehydrogenase complexed with NAD and pentafluorobenzyl alcohol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.132 
  • R-Value Work: 0.118 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Substitutions of amino acid residues in the substrate binding site of horse liver alcohol dehydrogenase have small effects on structure but significantly affect catalysis of hydrogen transfer.

Plapp, B.V.Kim, K.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Alcohol dehydrogenase E chain
A, B
374Equus caballusMutation(s): 1 
EC: 1.1.1.1
Find proteins for P00327 (Equus caballus)
Go to UniProtKB:  P00327
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
NAJ
Query on NAJ

Download SDF File 
Download CCD File 
A, B
NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM)
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
 Ligand Interaction
MRD
Query on MRD

Download SDF File 
Download CCD File 
A, B
(4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N
 Ligand Interaction
PFB
Query on PFB

Download SDF File 
Download CCD File 
A, B
2,3,4,5,6-PENTAFLUOROBENZYL ALCOHOL
C7 H3 F5 O
PGJYYCIOYBZTPU-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.132 
  • R-Value Work: 0.118 
  • Space Group: P 1
  • Diffraction Data DOI: 
    10.15785/SBGRID/650 SBGrid
Unit Cell:
Length (Å)Angle (°)
a = 44.500α = 91.80
b = 51.520β = 103.07
c = 92.540γ = 110.42
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
REFMACrefinement
d*TREKdata reduction
REFMACphasing
d*TREKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2019-03-12 
  • Released Date: 2019-04-10 
  • Deposition Author(s): Plapp, B.V.

Funding OrganizationLocationGrant Number
Department of Health & Human ServicesUnited StatesAA00279
Department of Health & Human ServicesUnited StatesGM078446

Revision History 

  • Version 1.0: 2019-04-10
    Type: Initial release