6O1Z | pdb_00006o1z

Structure of pCW3 conjugation coupling protein TcpA hexagonal crystal form

• PDB DOI: https://doi.org/10.2210/pdb6O1Z/pdb

• Classification: TRANSLOCASE
• Organism(s): Clostridium perfringens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2019-02-22 Released: 2020-03-04 
• Deposition Author(s): Traore, D.A.K., Ahktar, N., Torres, V.T., Adams, V., Coulibaly, F., Panjikar, S., Caradoc-Davies, T.T., Rood, J.I., Whisstock, J.C.
• Funding Organization(s): National Health and Medical Research Council (NHMRC, Australia)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.10 Å
• R-Value Free: 
  0.275 (Depositor), 0.279 (DCC) 
• R-Value Work: 
  0.197 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.201 (Depositor) 

Starting Model: experimental

Literature

Structure of pCW3 conjugation coupling protein TcpA

Traore, D.A.K., Whisstock, J.C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 41.17 kDa 
• Atom Count: 2,854 
• Modeled Residue Count: 360 
• Deposited Residue Count: 365 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA translocase coupling protein	A	365	Clostridium perfringens	Mutation(s): 0  Gene Names: tcpA, pCW3_0030
UniProt
Find proteins for Q1PLI0 (Clostridium perfringens) Explore Q1PLI0  Go to UniProtKB:  Q1PLI0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.10 Å
• R-Value Free:  0.275 (Depositor), 0.279 (DCC) 
• R-Value Work:  0.197 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.201 (Depositor) 

Space Group: P 6 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 108.5	α = 90
b = 108.5	β = 90
c = 148.99	γ = 120

Software Package:

Software Name	Purpose
BUSTER	refinement
SCALA	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2020-03-04 
Deposition Author(s): Traore, D.A.K., Ahktar, N., Torres, V.T., Adams, V., Coulibaly, F., Panjikar, S., Caradoc-Davies, T.T., Rood, J.I., Whisstock, J.C.

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Funding Organization	Location	Grant Number
National Health and Medical Research Council (NHMRC, Australia)	Australia	GNT1104502

Revision History  

• Version 1.0: 2020-03-04
  Type: Initial release
  
• Version 1.1: 2023-10-11
  Changes: Data collection, Database references, Refinement description