6NZI

Low resolution crystal structure of the bacterial multidrug efflux transporter AcrB in the presence of cadmium


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.44 Å
  • R-Value Free: 0.320 
  • R-Value Work: 0.260 
  • R-Value Observed: 0.263 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Low resolution crystal structure of the bacterial multidrug efflux transporter AcrB in the presence of cadmium

Smith, A.T.Rosenzweig, A.C.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Efflux pump membrane transporterA1049Escherichia coliMutation(s): 0 
Gene Names: 
acrBacrB_1acrB_2acrB_3acrB_4acrB_5acrB_6A8C65_09270A9819_02265A9X72_18695AC789_1c04620ACN002_0478ACN68_10695ACN81_24630ACU57_11680ACU90_20590AM270_01980AM464_19305AMK83_09190AML35_17310AUQ13_18190AW059_13640AWB10_19050AWG78_005565B6V57_02435BANRA_00889BANRA_00999BB545_15910BEN53_04520BHF03_18080BHF46_21335BHS81_02950BHS87_02495BIQ87_02540BIZ41_13825BJJ90_19940BK248_01725BK292_14280BK296_16050BK334_05580BK373_00965BK383_14595BMA87_04530BMT49_03610BMT91_04935BN17_02651BOH76_16460BON63_11900BON65_19130BON66_08715BON69_11225BON71_10040BON72_14720BON75_11085BON76_24190BON86_26060BON94_15210BON95_06075BON98_18530BTQ06_00925BUE81_06435BvCms12BK_04863BvCms2454_01835BvCms28BK_00632BvCmsC61A_03075BvCmsHHP019_03148BvCmsHHP056_01479BvCmsKKP061_00163BvCmsKSNP073_04604BvCmsKSNP081_04683BvCmsKSNP120_04201BvCmsKSP011_05014BvCmsKSP024_04861BvCmsKSP026_02627BvCmsKSP045_04703BvCmsKSP058_04933BvCmsKSP067_05122BvCmsKSP076_04688BvCmsNSNP036_04234BvCmsNSP006_01210BvCmsNSP007_00776BvCmsNSP047_01693BvCmsNSP072_02397BvCmsOUP014_01037BvCmsSINP011_02642BvCmsSINP022_01605BvCmsSIP019_03696BvCmsSIP044_00930BW690_06940BWI89_12175BXT93_07785BZL31_19295C2U48_07740C4K41_07725C4M78_18085C5F73_09745C5N07_13110C5P01_15940C5P44_16955C6669_02375C6B13_10325C7B02_04170C7B06_13000C7B07_14810C9114_13235C9141_12200C9160_00185C9162_13005C9201_04165C9E25_04215C9Z03_06210C9Z23_00255C9Z28_08635C9Z37_05005C9Z39_05195C9Z43_06095C9Z69_16095C9Z70_09245CA593_00820CDC27_01240CDL37_08810CF006_06195CG692_04680CI693_16095CI694_14685CIG45_11530CJU63_02500CJU64_02490CMR93_03420CO706_24730COD46_04485CR538_19130CR539_06565CRD98_02045CRJUMX01_650090CRM83_13415CT146_16100CV83915_01104CWS33_13665D0X26_07790D2184_11155D2185_12425D3C88_31425D3O91_18365D4023_06520D4628_13155D4636_06025D4638_05215D4718_02720D4V08_10150D6T60_09670D6T98_07735D6W00_12590D6X36_16210D7W70_07875D7Z75_05690D9C99_07900D9D20_11125D9D44_10685D9E13_00485D9E19_02400D9E35_07135D9E73_21575D9F17_03155D9F32_03530D9F87_10685D9G11_17580D9G29_00450D9G42_13565D9G69_10585D9G95_10390D9H36_07220D9H68_03680D9H70_06065D9H94_07380D9I18_05035D9I87_03680D9I97_02625D9J11_02570D9J44_06200D9J52_11760D9J63_03815D9K02_03900D9K54_20470D9Z28_24640DAH18_15350DAH30_15550DAH34_12755DAH37_04875DB359_14850DBQ99_19255DEN89_14865DEN97_16890DEO04_04920DEO19_17525DEO20_17510DJ487_10315DJ503_01450DK132_02395DL292_07005DL326_11785DL479_02540DL545_18765DL705_13145DLU50_07900DLU67_10935DLU82_01970DLW88_19215DLX40_09005DLY41_06715DLY44_14465DM129_08550DM267_01255DM296_06955DM382_09705DM820_06155DM973_09850DMY83_13165DN627_04140DN660_06030DN700_07110DN808_01530DNC98_06145DND79_04450DNI21_09935DNR35_00855DNW42_12745DNX19_03500DOY61_02460DOY67_09480DP258_04725DP265_04400DP277_07910DQE91_07055DQF36_01200DQF57_08040DQF72_04240DQO13_05880DQP61_17770DRW19_06780DS732_07285DT034_10130DTL43_07030DTL90_18880DTM10_06440DU333_14630DW236_16180DWB25_18810DXT69_07740DXT71_02600DXT73_02225E0I42_07045E0K84_10260E2112_11465E2114_15395E2115_11930E2119_01370E2127_09005E2128_08320E2129_12030E2134_12580E2135_12650E2148_08850E4A44_12425E4K51_12425E4K55_09900E4K60_11595E5P22_01620E5P24_11315E5P28_18315E5P37_02890E5S42_13425E5S56_04760EA184_13145EA189_17430EA218_08750EA223_15405EA231_12325EA239_15375EA250_11755EA429_15685EAI46_01035EAI52_03305EAN77_07570EAX79_06460EB476_04025EB525_RS00175EC1094V2_3386EC3426_01300EC382_09135ECONIH1_02500ECTO6_03638ED178_10910ED307_06795ED648_02095EEP23_01410EG075_08750EG796_01740EH186_13990EHD79_03845EI021_20720EI028_12150EI032_07905EI041_08500EIA08_09625EIA21_12180EJC75_24510EL75_3290EL79_3385EL80_3339ELT20_07985ELT58_12170ELV08_01140ELY05_12005EO241_14205EPT01_06710EPU41_02295EQ825_17705ERS085365_02371ERS085366_03391ERS085374_02303ERS085379_01141ERS139211_01948ERS150873_01787ExPECSC019_00381ExPECSC038_03243EXX06_12030EXX13_09300EXX23_10330EXX24_02235EXX53_07265EXX55_11505EXX71_19130EXX78_05470EXX87_11195EYD11_17095EYX82_01500EYX99_02255EYY27_15910EYY78_02330F1E13_02930F1E19_02810F7F11_07205F7F18_02645F7F29_13450F7F56_10820F9040_08845F9225_13995F9X20_11065F9Z53_11120F9Z74_08955FORC82_3586FQ022_06350FQ915_11580FQR64_17285FQU83_20500FQZ46_14155FRV13_04215FV293_05765FV438_08525FZ043_05490FZN06_02310FZN30_08470G3V64_03945G5603_08575G5608_10915G5616_17800G5632_14455G5686_06550G5688_07040GHR40_21640GII67_09125GII91_03825GKF21_12125GKF28_11295GKF34_11195GKF39_01530GKF47_11385GKF52_13635GKF74_01825GKF86_04555GKF89_04410GKG12_03295GNZ03_09590GNZ05_01310GP650_17935GP654_09140GP666_11010GP671_13130GP678_16470GP689_14290GP698_14015GP700_10545GP720_06095GP727_13610GP892_11190GP912_14175GP935_15175GP945_16670GP946_00315GP950_13345GQA06_04590GQA23_11080GQA63_01155GQA64_12425GQE22_08970GQE30_17545GQE33_07470GQE34_01120GQE42_04545GQE51_10380GQE58_13150GQE64_19110GQE87_01345GQE93_05675GQF59_01155GQL64_11830GQM10_04910GQM17_15105GQM18_02835GQM28_04965GQN16_06365GQN24_05120GQY14_07730GRW05_06170GRW12_18865GRW27_17010GRW30_01790GRW42_02940GRW80_13135GRW81_04465GUB85_11530GUB91_14860GUB95_14530GUC01_07830GUC12_14650GZS12_17565HmCms184_01943HmCmsJML079_00721HmCmsJML146_03063HmCmsJML204_02413HW43_05935MJ49_04125MS6198_04670MS8345_00466NCTC10418_05566NCTC10766_05800NCTC10865_04672NCTC10963_03279NCTC11126_00116NCTC11181_01060NCTC12650_04129NCTC13148_06601NCTC13216_02965NCTC13846_03608NCTC9007_00190NCTC9036_03767NCTC9045_04279NCTC9055_00632NCTC9058_03192NCTC9062_04550NCTC9111_03904NCTC9117_04708NCTC9119_03922NCTC9434_02883NCTC9706_01042NCTC9969_03956PGD_02849PU06_12600RG28_02520RK56_026290RX35_02133SAMEA3472043_02753SAMEA3472044_00392SAMEA3472047_02966SAMEA3472055_02089SAMEA3472056_03557SAMEA3472070_02210SAMEA3472080_01739SAMEA3472090_01741SAMEA3472108_01933SAMEA3472114_01186SAMEA3484427_03472SAMEA3484429_01960SAMEA3485101_03912SAMEA3752553_00212SAMEA3752557_00298SAMEA3752559_02826SAMEA3752620_00857SAMEA3753064_01307SAMEA3753097_00439SAMEA3753164_00290SAMEA3753290_01796SAMEA3753300_00529SK85_00486UN86_09270UN91_18355WQ89_01050WR15_04005

Membrane Entity: Yes 
UniProt
Find proteins for E2QH56 (Escherichia coli)
Explore E2QH56 
Go to UniProtKB:  E2QH56
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CD
Query on CD

Download Ideal Coordinates CCD File 
B [auth A], C [auth A]CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.44 Å
  • R-Value Free: 0.320 
  • R-Value Work: 0.260 
  • R-Value Observed: 0.263 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 144.28α = 90
b = 144.28β = 90
c = 519.52γ = 120
Software Package:
Software NamePurpose
XDSdata reduction
xia2data scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
MrBUMPphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-02-27
    Type: Initial release