6NYR | pdb_00006nyr

The crystal structure of CroV588 a novel circular LRR protein structure

• PDB DOI: https://doi.org/10.2210/pdb6NYR/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Rheavirus
• Expression System: Escherichia
• Mutation(s): No 


• Deposited: 2019-02-12 Released: 2020-08-12 
• Deposition Author(s): Huyton, T., Jaiswal, M., Gorlich, D.
• Funding Organization(s): German Federal Ministry for Education and Research

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.43 Å
• R-Value Free: 
  0.257 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.220 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.222 (Depositor) 

Literature

The crystal structure of CroV588 a novel circular LRR protein structure

Huyton, T., Jaiswal, M., Gorlich, D.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 157.01 kDa 
• Atom Count: 11,954 
• Modeled Residue Count: 1,360 
• Deposited Residue Count: 1,362 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Crov588	A, B	681	Rheavirus	Mutation(s): 0
UniProt
Find proteins for A0A4D6WFR4 (Cafeteria roenbergensis virus) Explore A0A4D6WFR4  Go to UniProtKB:  A0A4D6WFR4

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	C [auth A], D [auth A], E [auth A], F [auth A], G [auth B]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.43 Å
• R-Value Free:  0.257 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.220 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.222 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 65.403	α = 90
b = 172.62	β = 94.79
c = 92.333	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2020-08-12 
Deposition Author(s): Huyton, T., Jaiswal, M., Gorlich, D.

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Funding Organization	Location	Grant Number
German Federal Ministry for Education and Research	Germany	SFB

Revision History  

• Version 1.0: 2020-08-12
  Type: Initial release
  
• Version 1.1: 2024-03-13
  Changes: Data collection, Database references