6NRC

hTRiC-hPFD Class3


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 8.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

The Chaperonin TRiC/CCT Associates with Prefoldin through a Conserved Electrostatic Interface Essential for Cellular Proteostasis.

Gestaut, D.Roh, S.H.Ma, B.Pintilie, G.Joachimiak, L.A.Leitner, A.Walzthoeni, T.Aebersold, R.Chiu, W.Frydman, J.

(2019) Cell 177: 751-765.e15

  • DOI: 10.1016/j.cell.2019.03.012
  • Primary Citation of Related Structures:  
    6NRC, 6NRB, 6NRD, 6NRA, 6NR9, 6NR8

  • PubMed Abstract: 
  • Maintaining proteostasis in eukaryotic protein folding involves cooperation of distinct chaperone systems. To understand how the essential ring-shaped chaperonin TRiC/CCT cooperates with the chaperone prefoldin/GIMc (PFD), we integrate cryoelectron microscopy (cryo-EM), crosslinking-mass-spectrometry and biochemical and cellular approaches to elucidate the structural and functional interplay between TRiC/CCT and PFD ...

    Maintaining proteostasis in eukaryotic protein folding involves cooperation of distinct chaperone systems. To understand how the essential ring-shaped chaperonin TRiC/CCT cooperates with the chaperone prefoldin/GIMc (PFD), we integrate cryoelectron microscopy (cryo-EM), crosslinking-mass-spectrometry and biochemical and cellular approaches to elucidate the structural and functional interplay between TRiC/CCT and PFD. We find these hetero-oligomeric chaperones associate in a defined architecture, through a conserved interface of electrostatic contacts that serves as a pivot point for a TRiC-PFD conformational cycle. PFD alternates between an open "latched" conformation and a closed "engaged" conformation that aligns the PFD-TRiC substrate binding chambers. PFD can act after TRiC bound its substrates to enhance the rate and yield of the folding reaction, suppressing non-productive reaction cycles. Disrupting the TRiC-PFD interaction in vivo is strongly deleterious, leading to accumulation of amyloid aggregates. The supra-chaperone assembly formed by PFD and TRiC is essential to prevent toxic conformations and ensure effective cellular proteostasis.


    Organizational Affiliation

    Department of Biology and Genetics, Stanford University, Stanford, CA 94305, USA. Electronic address: jfrydman@stanford.edu.



Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Prefoldin subunit 1A [auth 1]107Homo sapiensMutation(s): 0 
Gene Names: PFDN1PFD1
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Prefoldin subunit 2B [auth 2]103Homo sapiensMutation(s): 0 
Gene Names: PFDN2PFD2HSPC231
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Prefoldin subunit 3C [auth 3]132Homo sapiensMutation(s): 0 
Gene Names: VBP1PFDN3
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Prefoldin subunit 4D [auth 4]104Homo sapiensMutation(s): 0 
Gene Names: PFDN4PFD4
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Prefoldin subunit 5E [auth 5]127Homo sapiensMutation(s): 0 
Gene Names: PFDN5MM1PFD5
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
Prefoldin subunit 6F [auth 6]102Homo sapiensMutation(s): 0 
Gene Names: PFDN6HKE2PFD6
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
T-complex protein 1 subunit alphaG [auth A], O [auth I]534Homo sapiensMutation(s): 0 
Gene Names: TCP1CCT1CCTA
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
T-complex protein 1 subunit betaH [auth B], P [auth J]509Homo sapiensMutation(s): 0 
Gene Names: CCT299D8.1CCTB
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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
T-complex protein 1 subunit gammaI [auth C], Q [auth K]513Homo sapiensMutation(s): 0 
Gene Names: CCT3CCTGTRIC5
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Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
T-complex protein 1 subunit deltaJ [auth D], R [auth L]514Homo sapiensMutation(s): 0 
Gene Names: CCT4CCTDSRB
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Entity ID: 11
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T-complex protein 1 subunit epsilonK [auth E], S [auth M]517Homo sapiensMutation(s): 0 
Gene Names: CCT5CCTEKIAA0098
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Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
T-complex protein 1 subunit zetaL [auth F], T [auth N]515Homo sapiensMutation(s): 0 
Gene Names: CCT6ACCT6CCTZ
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Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
T-complex protein 1 subunit etaM [auth G], U [auth O]514Homo sapiensMutation(s): 0 
Gene Names: CCT7CCTHNIP7-1
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Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
T-complex protein 1 subunit thetaN [auth H], V [auth P]514Homo sapiensMutation(s): 0 
Gene Names: CCT8C21orf112CCTQKIAA0002
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 8.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)United StatesR01GM074074
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)United StatesF32GM103124
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)United StatesP41GM103832
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)United StatesR01GM079429
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)United StatesP01NS092525
European Research Council (ERC)European UnionAdvG #233226
European Research Council (ERC)European UnionAdvG #670821

Revision History  (Full details and data files)

  • Version 1.0: 2019-06-19
    Type: Initial release
  • Version 1.1: 2019-12-18
    Changes: Author supporting evidence