6NN6

Structure of Dot1L-H2BK120ub nucleosome complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.9 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural Basis for Recognition of Ubiquitylated Nucleosome by Dot1L Methyltransferase.

Anderson, C.J.Baird, M.R.Hsu, A.Barbour, E.H.Koyama, Y.Borgnia, M.J.McGinty, R.K.

(2019) Cell Rep 26: 1681-1690.e5

  • DOI: 10.1016/j.celrep.2019.01.058

  • PubMed Abstract: 
  • Histone H3 lysine 79 (H3K79) methylation is enriched on actively transcribed genes, and its misregulation is a hallmark of leukemia. Methylation of H3K79, which resides on the structured disk face of the nucleosome, is mediated by the Dot1L methyltra ...

    Histone H3 lysine 79 (H3K79) methylation is enriched on actively transcribed genes, and its misregulation is a hallmark of leukemia. Methylation of H3K79, which resides on the structured disk face of the nucleosome, is mediated by the Dot1L methyltransferase. Dot1L activity is part of a trans-histone crosstalk pathway, requiring prior histone H2B ubiquitylation of lysine 120 (H2BK120ub) for optimal activity. However, the molecular details describing both how Dot1L binds to the nucleosome and why Dot1L is activated by H2BK120 ubiquitylation are unknown. Here, we present the cryoelectron microscopy (cryo-EM) structure of Dot1L bound to a nucleosome reconstituted with site-specifically ubiquitylated H2BK120. The structure reveals that Dot1L engages the nucleosome acidic patch using a variant arginine anchor and occupies a conformation poised for methylation. In this conformation, Dot1L and ubiquitin interact directly through complementary hydrophobic surfaces. This study establishes a path to better understand Dot1L function in normal and leukemia cells.


    Organizational Affiliation

    Department of Integrative Biology, Institut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS, INSERM, UdS, 1 rue Laurent Fries, 67404, Illkirch CEDEX, France.,Department of Cell Biology and Physiology, Washington University, St. Louis, MO, 63110, USA.,Department of Chemistry and Biochemistry, Montana State University, Bozeman, MT 59717.,Viral Special Pathogens Branch, Division of High Consequence Pathogens and Pathology, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America.,College of Veterinary Medicine, Kangwon National University, Chuncheon, 24341, Republic of Korea.,From the National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bengaluru 560065, India rana@ncbs.res.in.,Center for Electron Microscopy Research, Korea Basic Science Institute, Ochang, Chungbuk, 28119, Republic of Korea.,Interdisciplinary Biotechnology Unit, Aligarh Muslim University, Aligarh, India.,Department of Molecular Biology, Centre for Molecular Biology Severo Ochoa (CSIC-UAM), University Autonomous from Madrid, C/ Nicolás Cabrera, 1, Cantoblanco, 28049, Madrid, Spain. mfernandez@cbm.csic.es.,Laboratoire d'Innovation Moléculaire et Applications, Université de Strasbourg|, Université de Haute-Alsace|, CNRS|, LIMA (UMR 7042), Equipe de Synthèse Organique et Molécules Bioactives (SYBIO), ECPM, 25 rue Becquerel, 67000, Strasbourg, France.,From the Institute for Stem Cell Biology and Regenerative Medicine, GKVK Post, Bangalore 560065, India, ramas@instem.res.in.,Infection and Immunity Research Laboratory, Metabolic Regulation Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, South Korea.,Department of Chemistry , The Hong Kong University of Science and Technology , Clear Water Bay , Kowloon , Hong Kong SAR , China.,Sorbonne Université, CNRS, Integrative Biology of Marine Models (LBI2M), Station Biologique de Roscoff (SBR), 29680 Roscoff, France czjzek@sb-roscoff.fr genicot@sb-roscoff.fr.,Department of Systems Biology, College of Life Science and Biotechnology, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul, 03722, Republic of Korea. hscho8@yonsei.ac.kr.,Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX 77030, USA.,Howard Hughes Medical Institute, University of California at Berkeley, Berkeley, CA 94720, USA.,Center for Inflammation Research, University of Texas Southwestern Medical Center, Dallas, TX, USA. Zhijian.Chen@UTSouthwestern.edu.,Molecular Biology and Structural Biology Programs, Sloan-Kettering Institute, New York, NY, 10065, USA. s-shuman@ski.mskcc.org.,National Center for Protein Science Shanghai, State Key Laboratory of Molecular Biology, CAS Center for Excellence on Molecular Cell Science, Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, 200031, Shanghai, China.,Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA.,Department of Biology , University of Waterloo , Waterloo , Ontario , Canada N2L 3G1.,Department of Biochemistry and Molecular Biology, SUNY Upstate Medical University, Syracuse, NY 13210, USA.,School of Pharmacy, University of Eastern Finland, 70211 Kuopio, Finland.,Department of Biochemistry, University of Washington, Seattle, WA, USA.,Department of Molecular Medicine, Department of Molecular and Cellular Neuroscience, Dorris Neuroscience Center, The Scripps Research Institute, La Jolla, CA 92037, USA.,Department of Pharmacology and Chemical Biology, Shanghai Jiao Tong University School of Medicine, Shanghai, PR China; Shanghai Universities Collaborative Innovation Center for Translational Medicine, Shanghai, PR China.,Saint Petersburg State University, Saint Petersburg 199034, Russian Federation.,Department of Molecular Bioscience, School of Biomedical Science, Kangwon National University, Chuncheon, 24341, Republic of Korea.,Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA. gabelli@jhmi.edu.,Center for Microbial Pathogenesis, The Research Institute at Nationwide Children's Hospital, Columbus, Ohio, USA.,Department of Chemistry and Biochemistry , Laurentian University , Sudbury , Ontario , Canada P3E 2C6.,Division of Chemical Biology and Medicinal Chemistry, Eshelman School of Pharmacy, The University of North Carolina, Chapel Hill, Chapel Hill, NC 27599, USA.,Department of Biology, University of Konstanz, Konstanz, 78457, Germany.,Department of Chemistry, University of Konstanz, Konstanz, 78457, Germany. joerg.hartig@uni-konstanz.de.,Istituto di Biofisica, Consiglio Nazionale delle Ricerche, Milano, Italy; Dipartimento di Bioscienze, Università degli Studi di Milano, Milano, Italy. Electronic address: matteo.derosa@cnr.it.,Department of Bioengineering and James H. Clark Center, Stanford University, Stanford, CA 94305, USA; Biosciences Division, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA.,the Beijing Advanced Innovation Center for Structural Biology, Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China, lixueming@tsinghua.edu.cn.,Department of Medicinal Chemistry and Molecular Pharmacology, Purdue University Center for Cancer Research, Purdue Institute for Drug Discovery, Purdue University, West Lafayette, IN, 47907, USA. yangdz@purdue.edu.,MRC Laboratory of Molecular Biology, Cambridge, UK.,MRC Laboratory of Molecular Biology, Cambridge, UK. scheres@mrc-lmb.cam.ac.uk.,Materials Science and Engineering, University of California, San Diego, La Jolla, CA, USA. tezcan@ucsd.edu.,Porto Reports , Brasília , DF 70790160 , Brazil.,Microbiology and Immunology, Carver College of Medicine, University of Iowa, Iowa City, Iowa 52242.,Division of Basic Science, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.,MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK.,Graduate Program in Quantitative and Computational Biosciences, Baylor College of Medicine, Houston, TX 77030, USA; Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX 77030, USA.,From the Early Discovery Biochemistry Department and dueber.erin@gene.com.,State Key Laboratory of Agrobiotechnology, China Agricultural University, 100083 Beijing, People's Republic of China.,From the Early Discovery Biochemistry Department and fairbrother.wayne@gene.com.,Department of Pharmacy, University of Patras, GR-26504 Patras, Greece.,Department of Dermatology, Yale University, New Haven, CT, USA.,Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, 4072, Australia. glenn.king@imb.uq.edu.au.,Biomolecular NMR Spectroscopy, Faculty of Chemistry and Biochemistry, Ruhr-University of Bochum, D-44780, Germany. Electronic address: raphael.stoll@ruhr-uni-bochum.de.,National Research Laboratory of Molecular Microbiology and Toxicology, Department of Agricultural Biotechnology and Center for Food Safety and Toxicology, Seoul National University, Seoul, 08826, South Korea. choish@snu.ac.kr.,Department of Biochemistry and Molecular Biology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, 21205, USA. anleung@jhsph.edu.,From the Department of Biochemistry and Molecular Medicine, Université de Montréal, Montréal, Québec H3C 3J7, Canada Jurgen.Sygusch@umontreal.ca.,School of Molecular Sciences, University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia.,Department of Biology, Faculty of Science, Niigata University, Niigata, Japan k-ito@bio.sc.niigata-u.ac.jp kasano@ksu.edu.,Department of Medical Biology, University of Melbourne, Parkville, Victoria, Australia. cowman@wehi.edu.au.,Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture, College of Life Sciences, Department of Microbiology, Nanjing Agricultural University, Nanjing, 210095, China.,Division of Oral Biology and Medicine, School of Dentistry, University of California, Los Angeles, California, USA.,Genentech Inc., 1 DNA Way, South San Francisco, CA 94080, USA. Electronic address: zhang.birong@gene.com.,School of Pharmacy , University of Waterloo , Waterloo , Ontario , Canada N2L 3G1.,Institute of Pharmaceutical Science, King's College London, Stamford Street, London SE1 9NH, United Kingdom.,Center for RNA Research, Institute for Basic Science, Seoul National University, Seoul, 08826, South Korea.,Department of Biochemistry, University of Washington, Seattle, WA, USA. dabaker@uw.edu.,From the Departments of Biochemistry and Molecular Genetics and cpetit@uab.edu.,Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, England.,Department of Physiology, Faculty of Medicine, Saitama Medical University, Saitama 350-0495, Japan.,Department of Pathogen Biology, Key Laboratory of Pathogen Biology of Jiangsu Province, Nanjing Medical University, Jiangsu, PR China.,Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA. Xiaochen.Bai@UTSouthwestern.edu.,Center for Advanced Medical Innovation, Kyushu University, Fukuoka 812-8582, Japan.,Department of Pathology and Laboratory Medicine, Indiana University School of Medicine, Indianapolis, IN, USA.,Department of Drug Discovery and Biomedical Sciences, College of Pharmacy, University of South Carolina, 715 Sumter Street, Columbia, SC 29208, USA.,Broad Institute of MIT and Harvard , Cambridge , Massachusetts 02139 , United States.,Department of Biological Sciences, Columbia University, New York, NY 10027, USA. Electronic address: ltong@columbia.edu.,School of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea; Steitz Center for Structural Biology, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea.,Department of Applied Chemistry and Biotechnology, Graduate School of Engineering, University of Fukui, Fukui-shi, Japan.,Center for Integrated Protein Science Munich at the Department Chemie, Lehrstuhl für Biochemie, Technische Universität München, Garching, Germany. Electronic address: michael.groll@tum.de.,CBS, Université de Montpellier, CNRS, INSERM, 34090 Montpellier, France.,National Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China; School of Medicine, Sun Yat-Sen University, Guangzhou 510275, China.,BIFI, University of Zaragoza, BIFI-IQFR (CSIC) Joint Unit, Mariano Esquillor s/n, Campus Rio Ebro, Edificio I+D, Zaragoza, 50018, Spain.,Applied Biotechnology Group, Biomedical Science School, Universidad Europea de Madrid, Urbanización El Bosque, Calle Tajo, s/n, 28670, Villaviciosa de Odón, Spain.,Institute of Health and Biomedical Innovation , Queensland University of Technology , Brisbane QLD 4059 , Australia.,Department of Biochemistry and Molecular Biology, Faculty of Biosciences, Universitat Autònoma de Barcelona, E-08193 Cerdanyola del Vallès, Spain. Electronic address: Guillem.Prats.Ejarque@uab.cat.,Department of Pharmacy, University of Patras, GR-26504 Patras, Greece. Electronic address: G.A.Spyroulias@upatras.gr.,Department of Structural Biochemistry, Max Planck Institute of Molecular Physiology, Dortmund, Germany.,Centre for Advanced Imaging, The University of Queensland, St Lucia, QLD, 4072, Australia.,Department of Physiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA. droberto@pennmedicine.upenn.edu.,School of Pharmacy, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, UK. j.angulo@uea.ac.uk.,Institute of Catalysis and Petrochemistry, CSIC, C/ Marie Curie, 2, Cantoblanco, 28049, Madrid, Spain.,Department of Biochemistry and Molecular Biology, Faculty of Biosciences, Universitat Autònoma de Barcelona, E-08193 Cerdanyola del Vallès, Spain. Electronic address: Mohammed.Moussaoui@uab.cat.,Department of Biology and Chemistry , City University of Hong Kong , 83 Tat Chee Avenue , Kowloon Tong , Hong Kong SAR , China.,Foundation for Applied Molecular Evolution, 13709 Progress Boulevard, No. 7, Alachua, FL 32615, USA.,Konstanz Research School Chemical Biology (KoRS-CB), Konstanz, 78457, Germany. joerg.hartig@uni-konstanz.de.,Institute of Pharmaceutical Chemistry, Goethe University, Frankfurt, Max-von-Laue-Straße 9, 60438 Frankfurt, Germany.,Department of Physics, Bernal Institute, University of Limerick, Limerick V94 T9PX, Ireland.,Dipartimento di Scienze per gli Alimenti, la Nutrizione e l'Ambiente, Università degli Studi di Milano, Milano, Italy.,Northwestern University Synchrotron Research Center, Life Sciences Collaborative Access Team, Northwestern University, Argonne, Illinois 60439.,Centre for Advanced Imaging, The University of Queensland, St Lucia, QLD, 4072, Australia. e.undheim@uq.edu.au.,the Center for Microbial Interface Biology, Ohio State University, Columbus, Ohio 43210, and.,the Beijing Advanced Innovation Center for Structural Biology, Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China.,Shandong Institute of Parasitic Diseases, Shandong Academy of Medical Sciences, Jining, China.,Division of Biomedical Convergence, College of Biomedical Science, Kangwon National University, Chuncheon, 24341, Republic of Korea. sungil@kangwon.ac.kr.,Department of Chemistry, Bryn Mawr College, Bryn Mawr, PA, United States of America.,Cell Adhesion Laboratory, Department of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, United States.,School of Pharmacy, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, UK.,Firebird Biomolecular Sciences LLC, 13709 Progress Boulevard, No. 17, Alachua, FL 32615, USA. manuscripts@ffame.org.,Structural Biology Program , Memorial Sloan-Kettering Cancer Center , New York , NY , USA . Email: v.kuryavyi@gmail.com.,Department of Mechanistic Cell Biology, Max Planck Institute of Molecular Physiology, Dortmund, Germany.,Department of Dermatology, Yale University, New Haven, CT, USA christopher.bunick@yale.edu.,State Key Laboratory of Agrobiotechnology, China Agricultural University, 100083 Beijing, People's Republic of China; jliu@cau.edu.cn thomas.kroj@inra.fr.,Department of Chemistry and Biology "A. Zambelli", University of Salerno, Via Giovanni Paolo II, 132, 84084, Fisciano, Salerno, Italy.,Marine College, Shandong University, Shandong, PR China.,WuXi AppTec, 288 Fute Zhong Road, Waigaoqiao Free Trade Zone, Shanghai 200131, China.,From the Interdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 201210, China, liulab@sioc.ac.cn.,Graduate School of Medical Life Science, Yokohama City University, 1-7-29, Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.,Division of Life Science , The Hong Kong University of Science and Technology , Clear Water Bay , Kowloon , Hong Kong SAR , China . Email: gzhu@ust.hk.,Department of Pharmacy, Seoul National University, Seoul, 08826, South Korea.,Department of Physiology and Systems Bioscience, Kyoto Prefectural University of Medicine, Kyoto 602-8566, Japan.,Institute of Transformative Bio-Molecules, Nagoya University, Nagoya 464-8601, Japan.,Section of Structural Biology, Department of Medicine, Imperial College London, London SW7 2AZ, UK. Electronic address: d.wigley@imperial.ac.uk.,Department of Microbiology and Molecular Genetics, University of Texas Health Science Center, Houston, Texas, USA rclubb@mbi.ucla.edu htonthat@dentistry.ucla.edu.,Department of Pharmacology and Chemical Biology, Shanghai Jiao Tong University School of Medicine, Shanghai, PR China; Shanghai Universities Collaborative Innovation Center for Translational Medicine, Shanghai, PR China. Electronic address: liangzhang2014@sjtu.edu.cn.,2School of Life Sciences (KNU Creative BioResearch Group), KNU Institute for Microorganisms, Kyungpook National University, Daehak-ro 80, Buk-gu, Daegu, 41566 Republic of Korea.,Instituto de Física de Líquidos y Sistemas Biológicos, CONICET, UNLP, Calle 59 No. 789, La Plata, Argentina.,2National Institute of Biological Sciences, Beijing, 102206 China.,b College of Life Sciences , University of Chinese Academy of Sciences , Beijing , China.,School of Medicine, Sun Yat-Sen University, Guangzhou 510275, China.,Institute for Molecular Bioscience , The University of Queensland , Brisbane QLD 4072 , Australia.,Department of Molecular Biology, Centre for Molecular Biology Severo Ochoa (CSIC-UAM), University Autonomous from Madrid, C/ Nicolás Cabrera, 1, Cantoblanco, 28049, Madrid, Spain.,Department of Pharmacology and Chemical Biology, Shanghai Jiao Tong University School of Medicine, Shanghai, PR China; Shanghai Universities Collaborative Innovation Center for Translational Medicine, Shanghai, PR China. Electronic address: zhanglin777@sjtu.edu.cn.,Department of Integrative Structural and Computational Biology, The Scripps Research Institute, 10550 N. Torrey Pines Road, La Jolla, CA 92037, USA.,Biomolecular NMR Spectroscopy, Faculty of Chemistry and Biochemistry, Ruhr-University of Bochum, D-44780, Germany.,Department of Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada. gerd.prehna@umanitoba.ca.,Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.,Department of Chemistry, University of Washington, Seattle, WA, USA.,Istituto di Biofisica, Consiglio Nazionale delle Ricerche, Milano, Italy; Dipartimento di Bioscienze, Università degli Studi di Milano, Milano, Italy.,Laboratory of Biochemistry and Molecular Biology, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.,a National Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics , Chinese Academy of Sciences , Beijing , China.,CryoEM Shared Resources, Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.,Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX, USA. Xuewu.Zhang@UTSouthwestern.edu.,MOE Key Laboratory of Bioinorganic and Synthetic Chemistry, School of Chemistry, Sun Yat-Sen University, Guangzhou, 510275, China. cesmzw@mail.sysu.edu.cn.,Department of Pharmaceutical and Biomedical Sciences, University of Georgia, Athens, Georgia, United States of America.,Molecular, Cellular, and Developmental Biology Program, Division of Biology, Kansas State University, Manhattan, Kansas, USA.,Department of Biochemistry and Molecular Biology, SUNY Upstate Medical University, Syracuse, NY 13210, USA. Electronic address: wilkenss@upstate.edu.,ERATO Itami Molecular Nanocarbon Project, JST, Nagoya 464-8601, Japan.,Structural Biology Department, Genentech, South San Francisco, California 94080.,Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA, USA.,Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA. gabelli@jhmi.edu.,Laboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, USA.,Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, 4072, Australia.,Molecular Biophysics and Integrated Bioimaging, Berkeley Center for Structural Biology, Lawrence Berkeley National Laboratory, Berkeley, California, USA.,Centre for Microscopy and Microanalysis, The University of Queensland, St Lucia, QLD, 4072, Australia.,Department of Health Sciences, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan.,Dipartimento di Bioscienze, Università degli Studi di Milano, Milano, Italy.,Molecular Neurobiochemistry, Faculty of Chemistry and Biochemistry, Ruhr-University of Bochum, D-44780, Germany.,Department of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana 1000, Slovenia.,Institute of Physiology II, Faculty of Medicine, University of Freiburg, D-79104 Freiburg, Germany.,Department of Biochemistry and Molecular Biology, Faculty of Biosciences, Universitat Autònoma de Barcelona, E-08193 Cerdanyola del Vallès, Spain.,National Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China. Electronic address: tjiang@ibp.ac.cn.,Department of Biochemistry and Molecular Biology and the Centre for Blood Research, University of British Columbia, Vancouver, BC V6T 1Z3, Canada. Electronic address: ncjs@mail.ubc.ca.,Biophysics Graduate Program, University of California, Berkeley, Berkeley, CA 94720, USA.,Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN 46202, USA.,Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.,Center for Drug Discovery, Northeastern University, Boston, MA 02115, USA.,Research and Development, GlaxoSmithKline, No. 3 Building, 898 Halei Road, Pudong, Shanghai 201203, China.,Division of Basic Sciences, Fred Hutchinson Cancer Research Center, 1100 Fairview Ave. N., Seattle, WA 98109, USA.,School of Pharmacy, Fudan University, 826 Zhangheng Road, Pudong, Shanghai 201203, China.,Institute of Biotechnology, Vilnius University, Vilnius, Lithuania. Electronic address: siksnys@ibt.lt.,Sosei Heptares, Steinmetz Building, Granta Park, Great Abington, Cambridge CB21 6GT, UK.,Department of Plant Sciences and Plant Pathology, Montana State University, Bozeman, MT 59717.,Centre for Structural Systems Biology (CSSB), German Electron Synchrotron (DESY), Hamburg, Germany.,Department of Chemistry, University of Konstanz, Konstanz, 78457, Germany.,Metabolomics Australia, School of Biosciences, The University of Melbourne, Parkville, VIC, 3010, Australia.,Genome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, NIH, Department of Health and Human Services, Research Triangle Park, NC 27709, USA.,Faculty of Natural Sciences, Department of Life Sciences, Imperial College London, Exhibition Road, South Kensington, London SW7 2AZ, England.,Institute for Biophysical Chemistry, OE4350, Hannover Medical School, Hannover, Germany.,Institute for Protein Design, University of Washington, Seattle, WA, USA. dabaker@uw.edu.,Department of Biochemistry and Molecular Biology, Faculty of Biosciences, Universitat Autònoma de Barcelona, E-08193 Cerdanyola del Vallès, Spain. Electronic address: Ester.Boix@uab.cat.,Department of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana 1000, Slovenia. Electronic address: matej.butala@bf.uni-lj.si.,Department of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.,Department of Pharmacology, University of Texas Southwestern Medical Center, Dallas, TX, USA. Xuewu.Zhang@UTSouthwestern.edu.,Department of Biochemistry and Molecular Biology, Faculty of Biosciences, Universitat Autònoma de Barcelona, E-08193 Cerdanyola del Vallès, Spain. Electronic address: Victoria.Nogues@uab.cat.,Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, 200011, Shanghai, China.,Department of Biology, Faculty of Science, Niigata University, Niigata, Japan.,Department of Physiology and Advanced Research Center for Medical Science, Toho University School of Medicine, Tokyo 143-8540, Japan.,S-inova Biotech, Programa de Pós-Graduação em Biotecnologia , Universidade Católica Dom Bosco Avenida Tamandaré 6000 , Campo Grande , MS 79117900 , Brazil.,BIFI, University of Zaragoza, BIFI-IQFR (CSIC) Joint Unit, Mariano Esquillor s/n, Campus Rio Ebro, Edificio I+D, Zaragoza, 50018, Spain. rhurtado@bifi.es.,Fraunhofer IME-TMP, Max-von-Laue-Straße 9, 60438 Frankfurt, Germany.,Rigel Pharmaceuticals, Inc., South San Francisco, California 94080, and.,Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD, 21287, USA. anleung@jhsph.edu.,Present address: School of Chemistry, University College Dublin, Stillorgan Road, Belfield, Dublin, 4, Ireland.,Department of Chemistry, University of York, Heslington, York, YO10 5DD, United Kingdom.,Saint Petersburg State University, Saint Petersburg 199034, Russian Federation. Electronic address: m.krasavin@spbu.ru.,RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan.,The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.,Beijing Advanced Innovation Center for Structural Biology, Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China. shi-lab@tsinghua.edu.cn.,Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139.,Institute for Advanced Study and State Key Laboratory of Molecular Neuroscience , The Hong Kong University of Science and Technology , Clear Water Bay , Kowloon , Hong Kong SAR , China.,Laboratory of Biochemistry and Molecular Biology, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA. Electronic address: baiyaw@mail.nih.gov.,Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain.,Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA. glander@scripps.edu a.martin@berkeley.edu.,Department of Medical Biology, University of Melbourne, Parkville, Victoria, Australia.,Department of Biology Education, Kyungpook National University, Daegu 41566, South Korea; Department of Biological Sciences, Columbia University, New York, NY 10027, USA. Electronic address: jhcbio@knu.ac.kr.,Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, 92093, USA.,GlaxoSmithKline R&D, Medicines Research Centre , Gunnels Wood Road , SG1 2NY Stevenage , U.K.,New England Biolabs, Inc., 240 County Road, Ipswich, MA 01938, USA.,School of Cellular & Molecular Medicine , University of Bristol , Bristol BS8 1TD , U.K.,Department of Mechanical and Aerospace Engineering, University of California, Los Angeles, CA 90095.,Research and Development, GlaxoSmithKline, 200 Technology Square, Suite 602, Cambridge, Massachusetts 02139, United States.,Division of Agronomy and Horticultural Science, Graduate School of Agriculture, Kyoto University, Uji-shi, Japan.,ExpreS2ion Biotechnologies, Horsholm, Denmark.,Institute of Biology, Westlake Institute for Advanced Study, Hangzhou, China. shi-lab@tsinghua.edu.cn.,Department of Microbiology and Molecular Genetics, University of Texas Health Science Center, Houston, Texas, USA.,Department of Genetic, University of Sevilla, Avenida Reina Mercedes s/n, 41012, Seville, Spain.,Ministry of Agriculture and Rural Affairs, Key Laboratory of Pest Monitoring and Green Management, China Agricultural University, 100083 Beijing, People's Republic of China.,MOE Key Laboratory of Bioinorganic and Synthetic Chemistry, School of Chemistry, Sun Yat-Sen University, Guangzhou, 510275, China.,National Key Laboratory of Crop Genetic Improvement, Huazhong Agriculture University, 430072, Wuhan, China.,Department of Biophysics, All India Institute of Medical Sciences, Ansari Nagar, New Delhi 110 029, India tpsingh.aiims@gmail.com.,From the Departments of Biochemistry and Molecular Genetics and.,Department of Chemistry, College of Science , University of Hail , Saudi Arabia.,Shanghai Institute of Precision Medicine, 200125, Shanghai, China. huangchh@shsmu.edu.cn.,Department of Biological Chemistry, University of Michigan, Ann Arbor, MI 48109.,Lomonosov Institute of Fine Chemical Technologies, Moscow Technological University, Moscow 117571, Russian Federation.,Molecular, Cellular, and Developmental Biology Program, Division of Biology, Kansas State University, Manhattan, Kansas, USA k-ito@bio.sc.niigata-u.ac.jp kasano@ksu.edu.,From the Interdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 201210, China.,Department of Pharmacology and Toxicology, College of Pharmacy , University of Arizona , Tucson , Arizona 85721 , United States.,University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing 100049, China.,Department of Immunology and Infectious Diseases, Harvard T. H. Chan School of Public Health, Boston, MA, USA.,Department of Stem Cell Biology and Medicine/Cancer Stem Cell Research, Kyushu University Graduate School of Medical Sciences, Fukuoka 812-8582, Japan.,BGPI, Université de Montpellier, CIRAD, INRA, Montpellier SupAgro, F-34398 Montpellier, France; jliu@cau.edu.cn thomas.kroj@inra.fr.,Sorbonne Université, CNRS, Integrative Biology of Marine Models (LBI2M), Station Biologique de Roscoff (SBR), 29680 Roscoff, France.,Laboratory of Immunology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA.,Institute of Molecular Biology and Biophysics, ETH Zürich, Otto-Stern-Weg 5, 8093 Zürich, Switzerland. locher@mol.biol.ethz.ch.,BGPI, Université de Montpellier, CIRAD, INRA, Montpellier SupAgro, F-34398 Montpellier, France.,Department of Pharmaceutical Chemistry , National and Kapodistrian University of Athens , 15771 Athens , Greece.,Institute of Biology, Westlake Institute for Advanced Study, Westlake University, 18 Shilongshan Road, Xihu District, Hangzhou 310024, Zhejiang Province, China.,Nanobody Lab, Department of Biochemistry, Faculty of Medicine and Health Sciences, Ghent University, Ghent, Belgium.,Department of Chemistry, Graduate School of Science, Nagoya University, Nagoya 464-8601, Japan.,Centro de Análises Proteômicas e Bioquímicas, Pós-Graduação em Ciências Genômicas e Biotecnologia , Universidade Católica de Brasília , SGAN 916 Módulo B, Asa Norte , Brasília , DF 70790160 , Brazil.,Department of Chemistry, Molecular Sciences Research Hub, Imperial College London, Wood Lane, London W12 0BZ, England.,Department of Microbiology, New York University School of Medicine, New York, NY, 10016, USA.,Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, 92093, USA.,School of Life Sciences, Westlake University, 18 Shilongshan Road, Xihu District, Hangzhou 310024, Zhejiang Province, China.,From the Center of Cancer and Cell Biology, Van Andel Research Institute, Grand Rapids, Michigan 49503, karsten.melcher@vai.org.,College of Materials and Energy, South China Agricultural University, Guangzhou, 510642, China.,From the National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bengaluru 560065, India.,Department of Biophysics, All India Institute of Medical Sciences, Ansari Nagar, New Delhi 110 029, India.,UVE: Aix-Marseille Univ-IRD 190-Inserm 27-IHU Méditerranée Infection, Marseille, France. Electronic address: Bruno.Coutard@univ-amu.fr.,Beijing National Laboratory for Molecular Sciences, National Centre for Mass Spectrometry in Beijing, CAS Key Laboratory of Analytical Chemistry for Living Biosystems, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China.,Department of Computational and Systems Biology, School of Medicine, University of Pittsburgh, 3501 Fifth Avenue, Suite 3064 BST3, Pittsburgh, PA 15260, USA.,Van Andel Research Institute-Shanghai Institute of Materia Medica (VARI-SIMM) Center, Center for Structure and Function of Drug Targets, The CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences (CAS), Shanghai 201203, China.,Laboratory of Structural Biophysics, National Cancer Institute, Frederick, MD 21701, USA.,Department of Molecular Structural Biology, Max Planck Institute of Biochemistry, 82152 Martinsried, Germany; lawrence@montana.edu.,Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139.,Department of Microbiology and Immunology, Montana State University, Bozeman, MT 59717.,Institute of Bioscience and Biotechnology, Kangwon National University, Chuncheon, 24341, Republic of Korea. sungil@kangwon.ac.kr.,Department of Chemistry, York Structural Laboratory, University of York, Heslington, York, YO10 5DD, UK.,Department of Biochemistry, University of Saskatchewan, Saskatoon, Canada.,the Departments of Biochemistry and.,Neurobiology Division, MRC Laboratory of Molecular Biology, Cambridge Biomedical Campus, Francis Crick Avenue, Cambridge CB2 0QH, UK.,School of Pharmaceutical Sciences , Sun Yat-sen University , Guangzhou 510006 , China.,Beijing Advanced Innovation Center for Structural Biology, Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China.,Department of Chemistry & Chemical Biology, Northeastern University, Boston, MA 02115, USA. Electronic address: c.mattos@northeastern.edu.,From the Department of Biochemistry and Molecular Medicine, Université de Montréal, Montréal, Québec H3C 3J7, Canada.,National Research Laboratory of Molecular Microbiology and Toxicology, Department of Agricultural Biotechnology and Center for Food Safety and Toxicology, Seoul National University, Seoul, 08826, South Korea.,Institute for Advanced Study , The Hong Kong University of Science and Technology , Clear Water Bay , Kowloon , Hong Kong SAR , China.,Department of Food Science and Engineering, Ewha Womans University, Seoul, 03760, South Korea.,Research Institute for Agriculture and Life Sciences, Center for Food and Bioconvergence, Center for Food Safety and Toxicology, Seoul National University, Seoul 08826, Korea.,Institute for Protein Design, University of Washington, Seattle, WA, USA.,Department of Microbiology, Yonsei University College of Medicine, 50-1 Yonsei-ro, Seodaemun-gu, Seoul, 03722, Republic of Korea. jsshin6203@yuhs.ac.,Future Medicine Co., Ltd, Seoul, 06665, South Korea.,the University of Trans-Disciplinary Health Sciences and Technology (TDU), Bengaluru, Karnataka 560064, India.,Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Straße 7, 60438 Frankfurt, Germany.,Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA. Zhijian.Chen@UTSouthwestern.edu.,Division of Biomedical Convergence, College of Biomedical Science, Kangwon National University, Chuncheon, 24341, Republic of Korea.,Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX, USA. Xiaochen.Bai@UTSouthwestern.edu.,National Research Laboratory of Molecular Microbiology and Toxicology, Seoul National University, Seoul 08826, Korea.,Department of Chemistry & Chemical Biology, Northeastern University, Boston, MA 02115, USA.,the University of the Chinese Academy of Sciences, Shijingshan District, Beijing 100049, China.,John Harvard Distinguished Science Fellowship Program, Harvard University, Cambridge, MA, USA.,Microbiology, University of Alabama at Birmingham, Birmingham, Alabama 35294.,Department of Immunology, The University of Texas Southwestern Medical Center, 6000 Harry Hines Blvd., Dallas, TX, 75390, USA.,Department of Biochemistry and Molecular Biology and Department of Chemistry, University of Chicago, Chicago, IL 60637, USA.,Genentech Inc., 1 DNA Way, South San Francisco, CA 94080, USA. Electronic address: liang.jun@gene.com.,Laboratory of Cell Biology, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.,Department of Veterinary Physiology, College of Veterinary Medicine, Research Institute for Veterinary Science, and BK21 PLUS Program for Creative Veterinary Science Research, Seoul National University, Seoul, 08826, South Korea.,N. D. Zelinsky Institute of Organic Chemistry, 47 Leninsky Prospect, Moscow 119991, Russian Federation.,PRESTO, JST, Nagoya 464-8601, Japan.,Institute for Molecular Bioscience , The University of Queensland , 306 Carmody Road , Brisbane , QLD 4072 , Australia.,FORMA Therapeutics, 500 Arsenal Street, Suite 100, Watertown, MA 02472, USA.,Department of Biological Sciences, University of Massachusetts Lowell, MA, USA.,Programa de Pós-Graduação em Patologia Molecular, Faculdade de Medicina , Universidade de Brasília , Campus Darcy Ribeiro, Asa Norte , Brasília , DF 70910900 , Brazil.,Department of Molecular Biochemistry and Pharmacology, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, 20156 Milan, Italy.,Department of Chemical Sciences, University of Naples Federico II, Napoli, Italy.,Department of Biomedical Science, University of Sheffield, Sheffield, S10 2TN, United Kingdom.,Severance Biomedical Science Institute and Institute for Immunology and Immunological Diseases, Yonsei University College of Medicine, 50-1 Yonsei-ro, Seodaemun-gu, Seoul, 03722, Republic of Korea. jsshin6203@yuhs.ac.,Department of Chemistry, University of Illinois, Urbana, IL, 61801, USA.,New Drug Development Center, Daegu-Gyeongbuk Medical Innovation Foundation, Daegu 41061, South Korea.,Selvita S.A., Bobrzyńskiego, 14, 30-338 Kraków, Poland.,Department of Agricultural Biotechnology and Center for Food Safety and Toxicology, Seoul National University, Seoul, 08826, South Korea.,Department of Biology Education, Kyungpook National University, Daegu 41566, South Korea.,Department of Biochemistry and Molecular Biology, Medical University of South Carolina, Charleston, SC 29425, USA.,Merck Biopharma, Merck KGaA, Frankfurter Straβe 250, 64293 Darmstadt, Germany.,Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia. cowman@wehi.edu.au.,Seattle Structural Genomics Center for Infectious Disease (SSGCID), Seattle, Washington, USA.,Department of Molecular Medicine, The Scripps Research Institute, Scripps Florida, Jupiter, Florida 33458.,Beijing Advanced Innovation Center for Structural Biology, Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing, China.,Institute of Molecular Biology and Biophysics, ETH Zürich, Otto-Stern-Weg 5, 8093 Zürich, Switzerland.,Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA. gabelli@jhmi.edu.,School of Biological Sciences, Seoul National University, Seoul, 08826, South Korea.,From the Early Discovery Biochemistry Department and.,UVE: Aix-Marseille Univ-IRD 190-Inserm 27-IHU Méditerranée Infection, Marseille, France.,From the Center of Cancer and Cell Biology, Van Andel Research Institute, Grand Rapids, Michigan 49503.,Department of Integrative Structural and Computational Biology, The Scripps Research Institute, 10550 N. Torrey Pines Road, La Jolla, CA 92037, USA. glander@scripps.edu a.martin@berkeley.edu.,Department of Systems Biology, College of Life Science and Biotechnology, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul, 03722, Republic of Korea.,Cambridge Institute for Medical Research and Department of Haematology, University of Cambridge, Wellcome Trust/MRC Building, Hills Road, Cambridge CB2 0XY, England.,Department of Bioengineering, Stanford University, Stanford, CA, USA.,Institute of Biology, Westlake Institute for Advanced Study, Hangzhou, China.,Institute of Biochemistry, Goethe University Frankfurt, Max-von-Laue-Straße 9, 60438 Frankfurt, Germany.,FORMA Therapeutics, 500 Arsenal Street, Suite 100, Watertown, MA 02472, USA. Electronic address: mmartin@formatherapeutics.com.,Key laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine, 200025, Shanghai, China. leim@shsmu.edu.cn.,The Department of Molecular Biosciences, University of Kansas, Lawrence, Kansas, 66045.,Molecular Biology and Structural Biology Programs, Sloan-Kettering Institute, New York, NY, 10065, USA.,Department of Molecular Structural Biology, Max Planck Institute of Biochemistry, 82152 Martinsried, Germany.,School of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea.,Technology Center for Protein Sciences, Ministry of Education Key Laboratory of Protein Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China.,Neurobiology Division, MRC Laboratory of Molecular Biology, Cambridge Biomedical Campus, Francis Crick Avenue, Cambridge CB2 0QH, UK. Electronic address: ig@mrc-lmb.cam.ac.uk.,Department of Pharmaceutical Chemistry , University of California , San Francisco , California 94158 , United States.,Crown Bioscience, Taicang, China.,Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, MA 02139.,Department of Biochemistry and Molecular Biology and the Centre for Blood Research, University of British Columbia, Vancouver, BC V6T 1Z3, Canada.,Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.,Applied Biotechnology Group, Biomedical Science School, Universidad Europea de Madrid, Urbanización El Bosque, Calle Tajo, s/n, 28670, Villaviciosa de Odón, Spain; Grupo de Investigación en Desarrollo Agroindustrial Sostenible, Universidad de la Costa, CUC, Calle 58 # 55 - 66, Barranquilla, Colombia. Electronic address: jesus.fernandez2@universidadeuropea.es.,Center for Systems and Synthetic Biology, University of Texas, Austin, TX 78703, USA.,Genentech Inc., 1 DNA Way, South San Francisco, CA 94080, USA.,Department of Physiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.,Department of Pathogen Biology, Key Laboratory of Pathogen Biology of Jiangsu Province, Nanjing Medical University, Jiangsu, PR China. Electronic address: hkbi@njmu.edu.cn.,Firebird Biomolecular Sciences LLC, 13709 Progress Boulevard, No. 17, Alachua, FL 32615, USA.,School of Life Sciences, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea; Steitz Center for Structural Biology, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea; Department of Chemistry, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea. Electronic address: eom@gist.ac.kr.,Department of Organic Chemistry, University of Campinas UNICAMP, Cidade Universitária Zeferino Vaz s/n, P.O. Box 6154, 13083-970, Campinas, SP, Brazil.,Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139; cdrennan@mit.edu.,Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA. dabaker@uw.edu.,Department of Applied Chemistry, Waseda University, Tokyo 169-8555, Japan.,Keck School of Medicine, University of Southern California, Los Angeles, CA 90089, USA.,College of Veterinary Medicine, Kansas State University, Manhattan, KS, 66506, USA.,Selvita S.A., Bobrzyńskiego, 14, 30-338 Kraków, Poland. Electronic address: mateusz.nowak@selvita.com.,Molecular Biophysics and Integrated Bioimaging, Berkeley Center for Structural Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.,School of Life Science and Engineering, Foshan University, Guangdong, China.,Toxicology and Pharmacology, University of Leuven, Leuven, 3000, Belgium.,The Department of Chemistry and Biochemistry, Auburn University, Auburn, Alabama, 36849.,EMBL Grenoble, 71 avenue des Martyrs, CS 90181, 38042 Grenoble Cedex 9, France.,Konstanz Research School Chemical Biology (KoRS-CB), Konstanz, 78457, Germany.,Department of Chemistry and Biochemistry and the UCLA-DOE Institute of Genomics and Proteomics, University of California, Los Angeles, California, USA.,Department of Pharmacology, University of Texas Southwestern Medical Center, Dallas, TX, USA.,From the Institute for Stem Cell Biology and Regenerative Medicine, GKVK Post, Bangalore 560065, India.,Department of Physics, Graduate School of Science, Nagoya University, Nagoya 464-8601, Japan, and RIKEN Center for Computational Science, Kobe 650-0047, Japan.,AFMB, UMR7257 CNRS/Aix Marseille Université, Marseille, CEDEX 9, France.,Vollum Institute, Oregon Health & Science University, Portland, United States.,Department of Microbiology, Yonsei University College of Medicine, 50-1 Yonsei-ro, Seodaemun-gu, Seoul, 03722, Republic of Korea.,Department of Biochemistry and Biophysics, School of Medicine, The University of North Carolina, Chapel Hill, Chapel Hill, NC 27599, USA.,Department of Molecular and Cell Biology and California Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, CA 94720, USA. eunyong_park@berkeley.edu.,Microbiology, Tumor and Cell Biology (MTC) Department, Karolinska Institutet, Stockholm, Sweden.,Beijing Advanced Innovation Center for Structural Biology, Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing, China. shi-lab@tsinghua.edu.cn.,Division for Structural Biochemistry, OE8830, Hannover Medical School, Hannover, Germany.,Laboratory of Molecular Physiology, NHLBI, National Institutes of Health, Bethesda, United States.,Graduate School of Science, Osaka Prefecture University, Osaka 599-8531, Japan.,Department of Physics, University of California, San Diego, La Jolla, CA, USA.,Department of Chemistry, Imperial College London, London SW7 2AZ, United Kingdom.,FORMA Therapeutics, 35 Northeast Industrial Road, Branford, CT 06405, USA.,Department of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA. anleung@jhsph.edu.,Fundación ARAID, 50018, Zaragoza, Spain. rhurtado@bifi.es.,Department of Bioengineering and James H. Clark Center, Stanford University, Stanford, CA 94305, USA; Biosciences Division, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA; Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX 77030, USA. Electronic address: wahc@stanford.edu.,CIRAD, UMR BGPI, F-34398 Montpellier, France.,Division of Chemical Biology and Medicinal Chemistry, Eshelman School of Pharmacy, The University of North Carolina, Chapel Hill, Chapel Hill, NC 27599, USA. Electronic address: rmcginty@email.unc.edu.,Department of Crystallography and Structural Biology, Institute of Physical Chemistry Rocasolano (CSIC), C/ Serrano, 119, 28006, Madrid, Spain.,Department of Computational and Systems Biology, School of Medicine, University of Pittsburgh, 3501 Fifth Avenue, Suite 3064 BST3, Pittsburgh, PA 15260, USA. Electronic address: bahar@pitt.edu.,Section of Structural Biology, Department of Medicine, Imperial College London, London SW7 2AZ, UK.,Department of Integrated Structural and Computational Biology, The Scripps Research Institute, 130 Scripps Way, Jupiter, FL 33458, USA.,Laboratory of Microbiology and Immunology, College of Pharmacy, Kangwon National University, Chuncheon, 24341, Republic of Korea.,1School of Energy and Chemical Engineering, UNIST, 50 UNIST-gil, Ulju-gun, Ulsan, 44919 Republic of Korea.,Department of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA. Zhijian.Chen@UTSouthwestern.edu.,Department of Chemistry and Biochemistry and the UCLA-DOE Institute of Genomics and Proteomics, University of California, Los Angeles, California, USA rclubb@mbi.ucla.edu htonthat@dentistry.ucla.edu.,DNA Software Inc., Ann Arbor, MI 48104, USA.,Department of Biochemistry and Molecular Biology, Houston Medical School, The University of Texas, Houston, United States.,the Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Bio-X Institutes, Shanghai Jiao Tong University, Shanghai 200030, China, and.,Institute of Biotechnology, Vilnius University, Vilnius, Lithuania.,Department of Medicinal Chemistry and Pharmacognosy, Center for Biomolecular Sciences, University of Illinois at Chicago, Chicago, Illinois, USA.,Istituto di Biofisica, Consiglio Nazionale delle Ricerche, Milano, Italy; Department of Molecular Biochemistry and Pharmacology, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, 20156 Milan, Italy.,Centro de Ciências Naturais e Humanas , Universidade Federal do ABC , Santo André , SP 09210170 , Brazil.,1MOE Key Laboratory of Protein Sciences, Beijing Advanced Innovation Center for Structural Biology, Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences and School of Medicine, Tsinghua University, Beijing, 100084 China.,Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA, USA. tezcan@ucsd.edu.,MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK. cgt@mrc-lmb.cam.ac.uk.,Department of Chemistry , University of Waterloo , Waterloo , Ontario , Canada N2L 3G1.,MRC Laboratory of Molecular Biology, Cambridge, UK. mg@mrc-lmb.cam.ac.uk.,California Institute for Quantitative Biosciences, University of California at Berkeley, Berkeley, CA 94720, USA.,Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, 200011, Shanghai, China. huangchh@shsmu.edu.cn.,Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA.,College of Materials and Energy, South China Agricultural University, Guangzhou, 510642, China. cesmzw@mail.sysu.edu.cn.,Synthetic Biology Group, MIT Synthetic Biology Center; The Center for Microbiome Informatics and Therapeutics; Research Laboratory of Electronics, Department of Biological Engineering, and Department of Electrical Engineering and Computer Science , Massachusetts Institute of Technology , Cambridge , Massachusetts 02139 , United States.,Center for Integrated Protein Science Munich at the Department Chemie, Lehrstuhl für Biochemie, Technische Universität München, Garching, Germany.,Shanghai Institute of Precision Medicine, 200125, Shanghai, China.,State Key Laboratory of Microbial Technology, Shandong University, Jinan, China.,Department of Biochemistry and Molecular Biology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, 21205, USA.,Chemistry Department, McGill University, Montreal, Quebec, H3A0B8, Canada.,Technology Center for Protein Sciences, Ministry of Education Key Laboratory of Protein Sciences, School of Life Sciences, Tsinghua University, Beijing, China.,Shanghai Institute of Precision Medicine, 200125, Shanghai, China. leim@shsmu.edu.cn.,Department of Technical Biochemistry, Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Allmandring 31, Stuttgart, Germany.,Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, 200011, Shanghai, China. leim@shsmu.edu.cn.




Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Histone H3.2
A, E
135Xenopus laevisMutation(s): 1 
Find proteins for P84233 (Xenopus laevis)
Go to UniProtKB:  P84233
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Histone H4
B, F
102Xenopus laevisMutation(s): 0 
Find proteins for P62799 (Xenopus laevis)
Go to UniProtKB:  P62799
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Histone H2A type 1
C, G
129Xenopus laevisMutation(s): 2 
Find proteins for P06897 (Xenopus laevis)
Go to UniProtKB:  P06897
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Histone H2B 1.1
D, H
124Xenopus laevisMutation(s): 2 
Find proteins for P02281 (Xenopus laevis)
Go to UniProtKB:  P02281
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
Histone-lysine N-methyltransferase, H3 lysine-79 specific
K
416Homo sapiensMutation(s): 0 
Gene Names: DOT1L (KIAA1814, KMT4)
EC: 2.1.1.43
Find proteins for Q8TEK3 (Homo sapiens)
Go to Gene View: DOT1L
Go to UniProtKB:  Q8TEK3
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin
L
80Homo sapiensMutation(s): 1 
Gene Names: UBC
Find proteins for F5H388 (Homo sapiens)
Go to Gene View: UBC
Go to UniProtKB:  F5H388
Entity ID: 5
MoleculeChainsLengthOrganism
DNA (145-MER)I145synthetic construct
Entity ID: 6
MoleculeChainsLengthOrganism
DNA (145-MER)J145synthetic construct
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.9 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research InstituteUnited StatesT32GM008570
National Institutes of Health/National Human Genome Research InstituteUnited StatesZIC ES103326

Revision History 

  • Version 1.0: 2019-02-13
    Type: Initial release
  • Version 1.1: 2019-02-27
    Type: Data collection, Database references