6NJ1

Crystal structure of class A beta-lactamase from Clostridium kluyveri DSM 555


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.399 Å
  • R-Value Free: 0.151 
  • R-Value Work: 0.123 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of class A beta-lactamase from Clostridium kluyveri DSM 555

Michalska, K.Welk, L.Endres, M.Joachimiak, A.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-lactamase
A
282Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)Mutation(s): 0 
Gene Names: bla
EC: 3.5.2.6
Find proteins for A5N1B8 (Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680))
Go to UniProtKB:  A5N1B8
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.399 Å
  • R-Value Free: 0.151 
  • R-Value Work: 0.123 
  • Space Group: P 32 2 1
Unit Cell:
Length (Å)Angle (°)
a = 66.878α = 90.00
b = 66.878β = 90.00
c = 119.795γ = 120.00
Software Package:
Software NamePurpose
HKL-3000data scaling
PHENIXrefinement
HKL-3000data reduction
HKL-3000phasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesHHSN272201700060C

Revision History 

  • Version 1.0: 2019-01-16
    Type: Initial release