6N9K

Beta-lactamase from Escherichia coli str. Sakai


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.156 
  • R-Value Work: 0.138 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Beta-lactamase from Escherichia coli str. Sakai

Osipiuk, J.Wu, R.Endres, M.Joachimiak, A.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-lactamase
A, B
361Escherichia coli O157:H7Mutation(s): 0 
Gene Names: ampC
EC: 3.5.2.6
Find proteins for Q8XDQ2 (Escherichia coli O157:H7)
Go to UniProtKB:  Q8XDQ2
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
CSX
Query on CSX
A, B
L-PEPTIDE LINKINGC3 H7 N O3 SCYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.156 
  • R-Value Work: 0.138 
  • Space Group: P 63
Unit Cell:
Length (Å)Angle (°)
a = 127.929α = 90.00
b = 127.929β = 90.00
c = 93.020γ = 120.00
Software Package:
Software NamePurpose
HKL-3000data reduction
HKL-3000phasing
REFMACrefinement
HKL-3000data scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesHHSN272201200026C
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesHHSN272201700060C

Revision History 

  • Version 1.0: 2018-12-12
    Type: Initial release